Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g05r
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi...   131   2e-31
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)           131   2e-31
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ...   130   4e-31
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ...   130   4e-31
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)           130   5e-31
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi...    31   0.43 
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    28   2.3  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    28   2.3  
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    27   4.0  
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...    27   6.9  
At1g15030.1 68414.m01796 expressed protein                             27   6.9  
At3g55560.1 68416.m06169 DNA-binding protein-related contains Pf...    26   9.1  

>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
           to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
           esculentum]
          Length = 140

 Score =  131 bits (317), Expect = 2e-31
 Identities = 61/101 (60%), Positives = 83/101 (82%)
 Frame = -2

Query: 321 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 142
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 141 ERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNINGL 19
           ERERR ++VP+ SA++ D ++VD +T +M   L  ++I G+
Sbjct: 77  ERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117


>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
          Length = 140

 Score =  131 bits (317), Expect = 2e-31
 Identities = 61/101 (60%), Positives = 83/101 (82%)
 Frame = -2

Query: 321 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 142
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 141 ERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNINGL 19
           ERERR ++VP+ SA++ D I+VD +T +M   L  ++ +G+
Sbjct: 77  ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGI 117


>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  130 bits (314), Expect = 4e-31
 Identities = 61/101 (60%), Positives = 82/101 (81%)
 Frame = -2

Query: 321 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 142
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 141 ERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNINGL 19
           ERERR ++VP+ SA++ D I+VD +T +M   L  ++  G+
Sbjct: 77  ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGI 117


>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  130 bits (314), Expect = 4e-31
 Identities = 61/101 (60%), Positives = 82/101 (81%)
 Frame = -2

Query: 321 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 142
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 141 ERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNINGL 19
           ERERR ++VP+ SA++ D I+VD +T +M   L  ++  G+
Sbjct: 77  ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGI 117


>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
          Length = 141

 Score =  130 bits (313), Expect = 5e-31
 Identities = 61/101 (60%), Positives = 82/101 (81%)
 Frame = -2

Query: 321 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 142
           IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 141 ERERRDNYVPEVSALEHDIIEVDPDTKDMSKMLDFNNINGL 19
           ERERR ++VP+ SA++ D I+VD +T +M   L  ++  G+
Sbjct: 77  ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGI 117


>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 790

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 207 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDM 55
           T L+    H +   + I LQ+  +E RR  YVP+ S + HD +E D   +DM
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDM 718


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 300 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 127
           LTL +D    ICEE A   +K   + +      L + L   ++R  + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 300 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 127
           LTL +D    ICEE A   +K   + +      L + L   ++R  + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737


>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 159 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 67
           +K  EEE   R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
           identical to SP|Q9SMV7 DNA mismatch repair protein
           MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
           thaliana}; GC donor splice site at exon 11
          Length = 1109

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 308 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 216
           + D   +L +IK  V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665


>At1g15030.1 68414.m01796 expressed protein
          Length = 360

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 248 FLPSLLGIKLL-DLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCL 102
           ++PSL GI++  D+  +   +   R+ EES S+FR  S  G ++ S++ L
Sbjct: 119 YVPSLSGIQVYADVDALTSSLQARRQGEESESDFRDSSSEGSSSESERGL 168


>At3g55560.1 68416.m06169 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 310

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 167 ESLSNFRKRSVRGVTTMSQKCLLSNMT 87
           ESL+ F +R  RGV+ +S   L++N+T
Sbjct: 130 ESLNAFARRRGRGVSVLSGSGLVTNVT 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,945,027
Number of Sequences: 28952
Number of extensions: 142709
Number of successful extensions: 448
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)