Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g02f
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0204 + 1539859-1540158                                           30   1.3  
04_04_1110 + 30973202-30973870                                         30   1.3  
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436...    29   2.9  
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    28   5.1  
01_06_0034 + 25769436-25769701,25769749-25769887                       28   6.8  
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194...    27   8.9  
12_01_0574 - 4697425-4698312                                           27   8.9  
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109...    27   8.9  

>12_01_0204 + 1539859-1540158
          Length = 99

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 202 YAGSWSPPGASDIINFSGRVTDVKADD 282
           +AGSW+  G   + +F GRVT V+  D
Sbjct: 38  HAGSWNGEGQGGLAHFGGRVTRVRRGD 64


>04_04_1110 + 30973202-30973870
          Length = 222

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 542 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 369
           L   + + + +P S T+  S+R+T A A     ++A  P +  L   L M    +A+P
Sbjct: 97  LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154


>01_06_1057 -
           34142979-34143114,34143212-34143390,34143496-34143669,
           34143757-34144005,34144108-34144233,34144341-34144565,
           34144657-34144747,34144837-34144951,34145312-34145366
          Length = 449

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 86  CGTADTQARARAKMKAFIVDWIL 18
           C   DTQ    +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 88  RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 183
           RDV+  PN + + D+   N  +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249


>01_06_0034 + 25769436-25769701,25769749-25769887
          Length = 134

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 507 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 397
           +V  +D +C+G+G G   +    G ++   RPQ A E
Sbjct: 16  EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52


>12_02_0959 +
           24818310-24818369,24818689-24819136,24819265-24819482,
           24819651-24819929
          Length = 334

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -3

Query: 507 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 415
           ++ +ND++   C G G+GS S DVL   +SG E+
Sbjct: 73  ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106


>12_01_0574 - 4697425-4698312
          Length = 295

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +1

Query: 346 VPRVSASVGSAEGE------IRIFSRVLRSFASGGLALENVVAEATASVSLA 483
           V   +  VG+AEGE      +R+ +R  R + S GLA+  +V  A A+ +LA
Sbjct: 220 VAAAAGDVGAAEGELREAQRLRVAARRRRLWLSAGLAVLLLVVLAAAAAALA 271


>02_05_1057 +
           33809982-33810366,33810436-33810687,33810727-33810926,
           33811021-33811122
          Length = 312

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 492 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 400
           +V C G G G+++ D  +G  SG  R  DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,312,901
Number of Sequences: 37544
Number of extensions: 297417
Number of successful extensions: 1011
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)