Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g01r
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...   118   4e-29
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...   113   2e-27
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...   113   2e-27
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.4  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   2.4  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   3.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.8  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score =  118 bits (285), Expect = 4e-29
 Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 16/240 (6%)
 Frame = -2

Query: 690 FASIPXSAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHESIQ 511
           FA++  +++ GVR P+L++ GN  F +M +   LYD T  T  L+NP LWPYT++     
Sbjct: 289 FANLTDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTI-TAPLSNPPLWPYTMYFRMPH 347

Query: 510 DCI--IPPCPTASIPGPW--VLPMISWR-DLNN---FP-CSMVDGCFFTPDRTDEEGWFK 358
            C   +  CPT S    W  VL  +  R D  N    P C+MVD C    +    + ++ 
Sbjct: 348 RCHGNLQSCPTRS-HAVWEMVLNELDRREDPTNDEYLPGCAMVDSC---SNILTGDQFYN 403

Query: 357 FILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMD-IINNLNDVFMVNSAEVID 181
           F+  NF+RHY  NRAP G + H  ++ +NP    AF+ ++D I+ N NDV+ V   +VI 
Sbjct: 404 FLNHNFDRHYEENRAPLGLYFHAAWLKNNPEFLDAFLYWVDEILANHNDVYFVTMTQVIQ 463

Query: 180 WVKNPVPI------DRYRQQQCKFTMPSICRPSFCGPLTGTHNQLSYYMTICNTCPRNYP 19
           W++NP  I      + +R++      P    P  C   +      +  +  C  CP NYP
Sbjct: 464 WIQNPRTITESKNFEPWREKCVVEGNPHCWVPHSCKLTSKEVPGETINLQTCVRCPNNYP 523


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score =  113 bits (271), Expect = 2e-27
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 15/239 (6%)
 Frame = -2

Query: 690 FASIPXSAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHESIQ 511
           FA+I   +I GVR P+L++ GN  F++MAD   +YD +  T +L    +WPYTL+     
Sbjct: 281 FANITDGSIIGVRAPYLRVGGNKQFEMMADQFFVYDASI-TASLGRVPIWPYTLYFRMPH 339

Query: 510 DCI--IPPCPTASIPGPWVLPM--ISWRDLNNFP-----CSMVDGCFFTPDRTDEEGWFK 358
            C      CP+ S P  W + M  +  RD   F      C MVD C  +  +T E+ + +
Sbjct: 340 KCNGNAHNCPSRSHP-VWEIVMNELDRRDDPTFDESLPGCHMVDSC--SNIQTGEQ-FAR 395

Query: 357 FILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFMVNSAEVIDW 178
            +  NF RH   NRAP G   H  ++ S    K   ++F++ +   NDV+ V + +VI W
Sbjct: 396 LLRHNFNRHLNSNRAPLGLHFHASWLKSKKEFKEELIKFIEEMLQRNDVYFVTNLQVIQW 455

Query: 177 VKNPVPIDRYR-----QQQCKFTMPSICR-PSFCGPLTGTHNQLSYYMTICNTCPRNYP 19
           ++NP  ++  R     +++C       C  P+ C   T      +  +  C  CP NYP
Sbjct: 456 MQNPTELNGLRDFQEWKEKCDIKGQPYCSLPNSCALTTRELPGETLRLFTCMECPNNYP 514


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score =  113 bits (271), Expect = 2e-27
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 15/239 (6%)
 Frame = -2

Query: 690 FASIPXSAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHESIQ 511
           FA+I   +I GVR P+L++ GN  F++MAD   +YD +  T +L    +WPYTL+     
Sbjct: 288 FANITDGSIIGVRAPYLRVGGNKQFEMMADQFFVYDASI-TASLGRVPIWPYTLYFRMPH 346

Query: 510 DCI--IPPCPTASIPGPWVLPM--ISWRDLNNFP-----CSMVDGCFFTPDRTDEEGWFK 358
            C      CP+ S P  W + M  +  RD   F      C MVD C  +  +T E+ + +
Sbjct: 347 KCNGNAHNCPSRSHP-VWEIVMNELDRRDDPTFDESLPGCHMVDSC--SNIQTGEQ-FAR 402

Query: 357 FILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFMVNSAEVIDW 178
            +  NF RH   NRAP G   H  ++ S    K   ++F++ +   NDV+ V + +VI W
Sbjct: 403 LLRHNFNRHLNSNRAPLGLHFHASWLKSKKEFKEELIKFIEEMLQRNDVYFVTNLQVIQW 462

Query: 177 VKNPVPIDRYR-----QQQCKFTMPSICR-PSFCGPLTGTHNQLSYYMTICNTCPRNYP 19
           ++NP  ++  R     +++C       C  P+ C   T      +  +  C  CP NYP
Sbjct: 463 MQNPTELNGLRDFQEWKEKCDIKGQPYCSLPNSCALTTRELPGETLRLFTCMECPNNYP 521


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 287 HSWTKNPNGALFPR*CLSKL--VRINLNHPSSSVRS 388
           H W K+P GA  P    S L   R + ++P+ S RS
Sbjct: 65  HPWKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSRS 100


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 525 HESIQDCIIPPC 490
           HE+I DC + PC
Sbjct: 66  HENINDCKVNPC 77


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/41 (29%), Positives = 15/41 (36%)
 Frame = -2

Query: 432 NNFPCSMVDGCFFTPDRTDEEGWFKFILTNFERHYLGNRAP 310
           N F      GC  T  R+DEE   +  +       LG   P
Sbjct: 88  NCFTTDYFKGCIDTLQRSDEEAQIQLWIKQIRGAELGGLGP 128


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 380 PTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNG 285
           P   +   ++ P S +  +G   R+DSS TNG
Sbjct: 749 PVGTNPHDINNPLSVNQLTGQCVRNDSSDTNG 780


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 380 PTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNG 285
           P   +   ++ P S +  +G   R+DSS TNG
Sbjct: 641 PVGTNPHDINNPLSVNQLTGQCVRNDSSDTNG 672


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 382 TVWREEATIHHGAREIV 432
           T  REE  IHH AR  V
Sbjct: 358 TQLREEGWIHHLARHAV 374


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,815
Number of Sequences: 336
Number of extensions: 4436
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)