Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11g01r
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0139 + 1263356-1264273 32 0.39
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 30 2.1
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 2.7
02_01_0308 + 2064510-2065613 29 2.7
05_07_0179 + 28195929-28195954,28195966-28196286,28196397-281966... 29 3.6
10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977 28 6.3
04_03_0465 - 16227552-16227842,16227993-16228217,16228342-162284... 28 6.3
04_01_0061 + 617966-618025,618619-618780 28 6.3
06_01_0499 - 3581145-3582425 28 8.4
>01_01_0139 + 1263356-1264273
Length = 305
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 449 SAGETSTISLAPWWMVASS-RQTVPTRKDGSSLS*PTSRDTTSGTEPRS 306
SA +ST +LAPW + R + PTR+ + + PT+ TT+ R+
Sbjct: 94 SASASSTPALAPWRPSSRRPRSSAPTRRTAAGATSPTTPSTTTSARART 142
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 395 SRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLS 246
S PT ++ + TS T PR+ SS+ N + PP+ LL+
Sbjct: 764 SPAAAPTISSSTTTTTGNGNGETSSTPPRNSSSNNNNADELLPPNGCLLT 813
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 289 FVDEESERGSVPEVVSLEVGQDKLEPSFLVGTVWREEATIHHGAREI-VEVSPADH 453
F+ R VPE V+ + ++ SFL TVW+ +H RE V VS ++
Sbjct: 694 FIQSSDRRDIVPENVAKNWFDELVDRSFLQPTVWQGRYVMHDLIREFSVAVSSNEY 749
>02_01_0308 + 2064510-2065613
Length = 367
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -2
Query: 183 DWVKNPVPIDRYRQQQCKFTMPSICRPSFCGPLTGTHNQLSYYMTI 46
DWV PIDRY C+ P P C G + + Y +
Sbjct: 152 DWVTTRGPIDRYNDWHCQSLPPPPYHPYSCS-FVGANGAIGGYAVV 196
>05_07_0179 +
28195929-28195954,28195966-28196286,28196397-28196664,
28203206-28203667
Length = 358
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 204 VNSAEVIDW-VKNPVPIDRYRQQQCKFTMPSICRPSFCGPLTGTHNQLS 61
++ EV+ W K P+P+ CK+ + + RP PLT Q++
Sbjct: 264 LSQTEVLSWDCKIPLPVTPQSLPSCKWDIYAGYRPGLLSPLTFASQQIN 312
>10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977
Length = 614
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Frame = -2
Query: 336 RHYLGNRAPFGFFVHEWFIS--------SNPAIKRAFVRFMDIINNLNDVFMVNSAEVID 181
RH+ + PF H W +S SN F+ DI+ DV + ++D
Sbjct: 48 RHHALSSCPFSAGGHTWHVSYYPNGGRDSNKNCISIFLVLKDIVTE-EDVMAKVTFSLLD 106
Query: 180 WVKNPVPIDRYRQQQCKF-TMPS 115
NPVP Y Q F T PS
Sbjct: 107 RYGNPVPSYTYHTQLRNFSTSPS 129
>04_03_0465 -
16227552-16227842,16227993-16228217,16228342-16228477,
16229756-16229974,16230269-16230569,16231865-16232108
Length = 471
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 420 CSMVDGCFFTPDRTDEEGWFKFILTNFERHYLGNRAPFGF-FVHEWFISSNPAIKRAFVR 244
C ++ F + EEGW++ + T +Y +RA G+ + F + + R FV
Sbjct: 165 CKRLETSLFISEYEQEEGWWRDLYTYVGLNYARDRAVEGYLWSCLVFYEKDLSFTRTFVA 224
Query: 243 FMDIINNLND 214
M ++ L D
Sbjct: 225 KMILLVTLMD 234
>04_01_0061 + 617966-618025,618619-618780
Length = 73
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 124 SKFALLLTVSIDRDGVLHPIDDFS*VH----HE-DII*VVNDIHESDKSAFDG 267
S L+L ++D GV+H D VH HE +++ + D HE+D +A DG
Sbjct: 19 SMAGLVLAGAVDDAGVVHVDGDVEGVHRDVLHEAELLVEIVDPHEADLNASDG 71
>06_01_0499 - 3581145-3582425
Length = 426
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 576 WPTTALTNPGLWPYTLHHESIQDCIIPPC 490
W TTA PG+ + + E D PPC
Sbjct: 259 WITTAAPTPGMLRFDVRREVFDDFPSPPC 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,869,366
Number of Sequences: 37544
Number of extensions: 509420
Number of successful extensions: 1387
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -