Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g01r
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                87   1e-17
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               78   6e-15
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       76   3e-14
SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   2.8  
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_9549| Best HMM Match : TP2 (HMM E-Value=2.9)                        29   3.7  
SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
 Frame = -2

Query: 681 IPXSAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHESIQDCI 502
           +P S IKG R PFL+++ +  +  +   +  YD +WPT    NP ++PYTL + SIQDC 
Sbjct: 207 LPSSTIKGFRAPFLEITEH-QYPGLYTNNFTYDLSWPTGRYYNPPMYPYTLDYRSIQDCP 265

Query: 501 IPPCPTASIPGPWVLPMISWRDLNNFPC-SMVDGCFFTPDRTDEEG 367
           +  CP  S PG WV+P I   D N   C +M+D C  T + T  +G
Sbjct: 266 VGKCPVMSYPGLWVVPNIDLMDGNGNVCGAMMDACNPTGNSTQCDG 311



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 192 EVIDWVKNPVPIDR---YRQQQCKFT-MPSICRPSFCGPLTGTHNQLSYYMTICNTCPRN 25
           +VI+W+KNP  ++    +    C     P    P+ C   T       +YM  C+ CP++
Sbjct: 465 QVIEWMKNPQDVNGANGFPAWDCLTRPKPRCTTPNVCHYTTPQ----DFYMPTCSDCPKH 520

Query: 24  YP 19
           +P
Sbjct: 521 FP 522


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 31/72 (43%), Positives = 46/72 (63%)
 Frame = -2

Query: 699  MAHFASIPXSAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHE 520
            +  F  +    ++G R PFLQ+ G+  F+V+ D   ++D + PT   T+P LWPYTL + 
Sbjct: 1659 LKEFGGVNEKDVRGFRAPFLQIGGDNQFKVLHDHSFMFDSSMPTWR-TDPPLWPYTLDYS 1717

Query: 519  SIQDCIIPPCPT 484
            S QDC+IPPCP+
Sbjct: 1718 SAQDCVIPPCPS 1729


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 31/69 (44%), Positives = 42/69 (60%)
 Frame = -2

Query: 690 FASIPXSAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHESIQ 511
           F  +    +KG R PFLQ+ G+  F+ + D    Y+ + PT    NP LWPYTL + S Q
Sbjct: 692 FGGVNAEDVKGFRAPFLQIGGDNEFKALHDNKFTYETSMPTQQ-NNPPLWPYTLEYASTQ 750

Query: 510 DCIIPPCPT 484
           +C+IPPCPT
Sbjct: 751 ECVIPPCPT 759



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -2

Query: 555 NPGLWPYTLHHESIQDCIIPPCPT 484
           NP  WPY+L + S Q+C+I PCPT
Sbjct: 784 NPPFWPYSLDYASTQECVILPCPT 807



 Score = 31.9 bits (69), Expect = 0.52
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 252 FVRFMDIINNLNDVFMVNSAEVIDWVKNPVPIDRYR 145
           + RF+    +  DV+ V  ++ I+W+K P P+++ +
Sbjct: 809 YQRFLTEALSQGDVYFVTVSQAIEWIKTPTPLEKIK 844


>SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/55 (29%), Positives = 32/55 (58%)
 Frame = -2

Query: 354 ILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFMVNSAE 190
           +L NF+ HY  N+APFG   H  + S +     A  +F+ ++ + +DV+++  ++
Sbjct: 2   MLLNFQYHYHSNKAPFGLHAHSAWFSQSTGHMEALRKFLTLVASRDDVWVLTVSQ 56


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 633  SGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHES 517
            SG  SF +    D  + CT    A  + G WP  L+H S
Sbjct: 3050 SGTLSFSIKGRLDGQFQCTLDARANADVGDWPALLYHVS 3088


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 633  SGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHES 517
            SG  SF +    D  + CT    A  + G WP  L+H S
Sbjct: 1500 SGTLSFGIKGRLDGQFQCTLDARANADVGDWPALLYHVS 1538


>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/91 (23%), Positives = 37/91 (40%)
 Frame = -3

Query: 401 ASSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSDXXXXXXX 222
           +SSR +  +    +S S  +S   +S +   S SSS++ S      S++  S        
Sbjct: 47  SSSRSSSNSNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSS 106

Query: 221 XXXXXXXTQLKSSIG*RTPSRSIDTVSSSAN 129
                  +   SS    + S S  + SSS++
Sbjct: 107 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 137


>SB_9549| Best HMM Match : TP2 (HMM E-Value=2.9)
          Length = 241

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 286 PFVDEESERGSVPEVVSLEVGQDKLEPSFLVGTVWREEATIHHGA 420
           P  DE    GS+PEV S E+  D+    FL      EE  + H A
Sbjct: 184 PITDESPVCGSIPEVESHELYVDEKVTRFLHNMRLEEERGVEHVA 228


>SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 380 PTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFR 276
           PTR    S   PT+R     T P++DSS+TN S R
Sbjct: 130 PTRPQTDS---PTNRLIHKPTRPQTDSSTTNSSTR 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,655,398
Number of Sequences: 59808
Number of extensions: 575722
Number of successful extensions: 1472
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)