Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11g01r
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31460.1 68414.m03852 expressed protein                             31   0.57 
At2g33250.1 68415.m04073 expressed protein                             29   2.3  
At5g01280.1 68418.m00037 expressed protein                             29   3.0  
At2g34510.1 68415.m04239 expressed protein contains Pfam profile...    28   7.0  
At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase fami...    28   7.0  
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    27   9.2  
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea...    27   9.2  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    27   9.2  

>At1g31460.1 68414.m03852 expressed protein
          Length = 301

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 286 PFVDEESERGSVPEVVSLEVGQDKLEPSFLVGTVWR 393
           P  D E E+ S P+  S     DKL PS L+G++WR
Sbjct: 183 PSTDSEPEKKSKPK--SKSSWFDKLSPSKLIGSIWR 216


>At2g33250.1 68415.m04073 expressed protein
          Length = 299

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 9   SYPGGNSWDTCCKSSCSKTADYEFPLVARRTMVYKLMA**ICTAAD 146
           SYP   S   C  SSCS+    +   + RR   YK     IC AAD
Sbjct: 31  SYPPSRSQLLCFSSSCSRVTSAKIIQLNRRRFSYK-----ICAAAD 71


>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -3

Query: 401 ASSRQTVPTRKDGSSL---S*PTSRDTTSGTEPRSDSSSTNGSFRQ-TPPSNA 255
           ++SR   PTRK  +     S PTSR T++ T     SSST  S R  + PS++
Sbjct: 93  STSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSS 145


>At2g34510.1 68415.m04239 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 401

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 356 LS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSD 243
           LS   + D+   T P  D    NG F +TPPSN    D
Sbjct: 21  LSIVAAADSAGKTSPVEDGLVVNGDF-ETPPSNGFPDD 57


>At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase family
           protein similar to PABA synthase from Streptomyces
           griseus [SP|P32483], Streptomyces pristinaespiralis
           [gi:1575336]; contains Pfam profiles  PF00425:
           chorismate binding enzyme, PF00117: glutamine
           amidotransferase class-I, PF04715: Anthranilate synthase
           component I, N terminal region
          Length = 919

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 363 FKFILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRF 241
           ++  LT   R  +GN  P G ++H      NPA   AF+ F
Sbjct: 664 YELCLTTQNRRKIGNADPLGLYLH--LRERNPAPYAAFLNF 702


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 366 WFKFILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFM 205
           W  F        Y   R    FFV E+ + +N AI   F +  + +NN   + M
Sbjct: 654 WNLFTRIALNPEYEALRDGIKFFVKEYVVKNNKAIYGKFRKAKEALNNAEGLLM 707


>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400); AND-1
            protein - Homo sapiens, EMBL:AJ006266
          Length = 951

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 23/95 (24%), Positives = 42/95 (44%)
 Frame = +2

Query: 179  QSMTSAEFTMKTSFKLLMISMNLTKARLMAGFDEMNHSWTKNPNGALFPR*CLSKLVRIN 358
            Q+  + E  MK+S   L     L K+++  G  ++    TK           + ++ ++N
Sbjct: 860  QTSENTEAVMKSSATKLSAPTLLKKSKVSEGL-KLGKEQTKKDKSDDAK---IKEIKKLN 915

Query: 359  LNHPSSSVRSGVKKQPSTMEQGKLLRSLQLIIGST 463
            L +P ++V    K Q   + QG+  RS    + ST
Sbjct: 916  LKNPVNNVNKEDKGQEKEVNQGEARRSSNPFLKST 950


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 283 EPFVDEESERGSVPEVVSLEVGQD-KLEPSFLVGTVWREEATIHHGAREIVEVSPADHRE 459
           E  V E S   +  EV +  V  + K     L   V     TIH GA++ V+  PA+++E
Sbjct: 688 ESDVKERSSINTDEEVATASVASEIKTCAQDLESKVVTSTDTIHTGAKDCVDSQPAENKE 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,931
Number of Sequences: 28952
Number of extensions: 394728
Number of successful extensions: 1109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)