Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f24r
(553 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0) 32 0.36
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044) 31 0.47
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0) 29 1.9
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16) 29 2.5
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 28 5.8
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08) 28 5.8
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 27 7.7
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11) 27 7.7
>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1433
Score = 31.9 bits (69), Expect = 0.36
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 236 PVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVA-ARLTTKLRKSLSLEVILPILK 412
PV T + CV P +R L +P V+++ +RQL+V+ + +L S+ + +
Sbjct: 77 PVTITPLVCVSPGSRQFLVSIPPTLVSVSSMSRQLLVSFSPAFHQLLASVLSTMRALFAR 136
Query: 413 ALALSVDLGSATSLVDTATIAVNTN 487
AL L +D+ + D + +V +N
Sbjct: 137 ALQLVIDMATNPYKDDKSASSVESN 161
>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
Length = 1693
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 251 LVNCVDPRTRTALTRLPAGAVNLTLRTRQLIV-AARLTTKLRKSLS 385
L N V R L + P G +NL +RTRQLI + L T R+++S
Sbjct: 12 LTNLVRDCVREELRKNPGGNINLLMRTRQLIANSPLLGTASREAVS 57
>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 1329
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/94 (25%), Positives = 40/94 (42%)
Frame = +2
Query: 17 KRQGSFVINTRIIN*KNGENEFFVQTKKQKLRVFACKRPEYAF*RPQICTVKKNALRGAF 196
KR + N+ N N + FF Q ++ ++ F + + P + KN L+ A
Sbjct: 102 KRLNASRTNSNASNPSNKQKTFF-QPHEKSIQRFGGRINVDKYHGPPLPNTAKNVLKEAN 160
Query: 197 TN*RFTKVKPTPPPVRRTLVNCVDPRTRTALTRL 298
KV+ R T+ +DPRTR + +L
Sbjct: 161 RKKDNEKVRSKDKADRATVEQVLDPRTRMIIFKL 194
>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
Length = 1222
Score = 29.1 bits (62), Expect = 2.5
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -3
Query: 185 EEHFFLPYKFGDAKMHILDVYMQIHE 108
++ F ++ +A H++D+Y+++HE
Sbjct: 464 DDQFLKSPEYSEASSHVMDIYLEVHE 489
>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1787
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +2
Query: 65 NGENEFFVQTKKQKLRVFACKRPEYAF*RPQICTVKKNALRGAFTN*RFTKVKPTPPPVR 244
NGE+E F+Q + R+ + + + P A+RG TK+ TPP
Sbjct: 1211 NGESEKFMQILNKTERIATLEGKDKSTPHPATGVTPYEAMRGVSVR---TKLDYTPPTTE 1267
Query: 245 RTL-VNCVDPRTRTALTRLPAGAVN 316
RT +D R ++ A N
Sbjct: 1268 RTAKEEAIDARDEEYKKKMKANRKN 1292
>SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 576
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = +2
Query: 263 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALSVDLGS 442
V + T + A V+ + T L VAA + +K ++ L V ++ +V+LG
Sbjct: 362 VSKASSTVELGVAATVVSKAISTVGLGVAATVVSKAISTVGLGVAATVVFNAISTVELGV 421
Query: 443 ATSLVDTATIAVNTNNRANFILQEICT 523
A ++V A+ V A + + I T
Sbjct: 422 AATVVSKASSTVELGVAATVVSKAIST 448
>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
Length = 382
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 144 NAYSGR-LHANTRSFCFFVCTKNSFSP 67
N SGR +++RSF F +C KN + P
Sbjct: 273 NTMSGRGYQSSSRSFLFTLCNKNGYRP 299
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 221 KPTPPPVRRT-LVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLE 391
+P PPP + L VD T L G N ++ RQL+ AR K L ++
Sbjct: 991 QPQPPPGNQVQLKEAVDELPDGIETELAEGGSNFSVGQRQLVCLARAILSHNKILVID 1048
>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
Length = 1123
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 181 SIFFYRTNLGTLKCIFWTFT--CKYTKF 104
S FY L C FWT T CKY K+
Sbjct: 1065 SELFYMCPLCDRNCSFWTLTRSCKYAKY 1092
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,465
Number of Sequences: 59808
Number of extensions: 296585
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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