BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11f23r (668 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9 >SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1421 Score = 27.9 bits (59), Expect = 7.9 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -3 Query: 660 IFTCLSKTCLFVNNLKSNLPTDIFIKGLQYF 568 +FTCLSKT + + + L TD F++ L F Sbjct: 1291 VFTCLSKTAVHL-EVSWGLDTDSFLRALNRF 1320 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,886,381 Number of Sequences: 59808 Number of extensions: 211603 Number of successful extensions: 312 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 308 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 312 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1729817375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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