Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f19f
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 246 9e-66
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 52 3e-07
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 52 3e-07
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 50 9e-07
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 50 9e-07
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 50 9e-07
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 40 0.002
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 40 0.002
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 40 0.002
At2g43870.1 68415.m05454 polygalacturonase, putative / pectinase... 31 0.61
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR... 30 1.4
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 29 2.5
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 29 3.3
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 28 4.3
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 28 4.3
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At3g01040.1 68416.m00005 glycosyl transferase family 8 protein c... 27 7.5
At2g41820.1 68415.m05168 leucine-rich repeat transmembrane prote... 27 7.5
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 27 10.0
At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate syntha... 27 10.0
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 246 bits (602), Expect = 9e-66
Identities = 115/181 (63%), Positives = 140/181 (77%)
Frame = +2
Query: 74 GGLRTIANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMAT 253
G L T ++E E +GYV VSGPVV A+ M+G+AMYELVRVG++ L+GEIIRLEGD AT
Sbjct: 7 GKLTTFEDDEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSAT 66
Query: 254 IQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGIN 433
IQVYEET+G+TV DPVLRT KPLSVELGPGILG+IFDGIQRPLK I ++ +YIP+G++
Sbjct: 67 IQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIARISGDVYIPRGVS 126
Query: 434 VPSLAREVDWEFNPLNVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGN 613
VP+L ++ WEF P G ITGGDLY V ENTL+ H + +PP A G +TYIAPAG
Sbjct: 127 VPALDKDCLWEFQPNKFVEGDTITGGDLYATVFENTLMNHLVALPPDAMGKITYIAPAGQ 186
Query: 614 Y 616
Y
Sbjct: 187 Y 187
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +2
Query: 125 VFAVSGPVVTAEKMSGSAMYELVRVGYNELV---GEIIRLEGDMATIQVYEETSGV-TVG 292
V V+GP+V EK+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 23 VSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKY 82
Query: 293 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 418
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 83 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 124
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +2
Query: 125 VFAVSGPVVTAEKMSGSAMYELVRVGYNELV---GEIIRLEGDMATIQVYEETSGV-TVG 292
V V+GP+V EK+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 23 VSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKY 82
Query: 293 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 418
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 83 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 124
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 50.4 bits (115), Expect = 9e-07
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +2
Query: 125 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGV-TVG 292
V V+GP+V +K+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 22 VSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKF 81
Query: 293 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 418
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 82 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 50.4 bits (115), Expect = 9e-07
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +2
Query: 125 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGV-TVG 292
V V+GP+V +K+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 22 VSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKF 81
Query: 293 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 418
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 82 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 50.4 bits (115), Expect = 9e-07
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +2
Query: 125 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGV-TVG 292
V V+GP+V +K+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 22 VSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKF 81
Query: 293 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 418
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 82 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 272 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 445
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 272 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 445
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 144 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 201
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 272 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 445
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At2g43870.1 68415.m05454 polygalacturonase, putative / pectinase,
putative similar to SP|P48979 Polygalacturonase
precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
persica}; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 384
Score = 31.1 bits (67), Expect = 0.61
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 559 HPVLDQSVLVYNTIQISTGD----VGPDLNI*WVKFPVNLPGQGRHVDTLGDVDGLSQLV 392
H SV ++NT +ISTGD +GP N W++ PG G + +LG S +
Sbjct: 194 HVQSSSSVSIFNT-KISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKDSVESGVQ 252
Query: 391 DVLEGTLNTVKDGTQDTGTK 332
+V T+ TV D G +
Sbjct: 253 NV---TVKTVTFTGTDNGVR 269
>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1059
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/34 (26%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 380 LKDINELTQSIYIPKGIN-VPSLAREVDWEFNPL 478
L+ + + ++ +Y+P+G+N +P R ++W++ P+
Sbjct: 613 LRVLRDRSEKLYLPQGLNYLPKKLRLIEWDYFPM 646
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 467 FNPLNVKVGSHITGGDLYGIVHENTLVKHRMLVP-PKAKGTVTY 595
+NP + V + GD Y IV N ++ + +P PK TV Y
Sbjct: 125 YNPSSESVNGLVCFGDFYNIVVWNPSMRQHVTLPEPKPHSTVRY 168
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 256 DGGHVTFKTDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGED 125
DGGH + + D+ IV D D + R G G DG +D
Sbjct: 124 DGGHDDEDNNFVDDDVIVNDGDGVGEDRDGDSDGDGDGGDDDDD 167
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 366 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSYTWM 253
P + P P PSS FPV + SPT+ P SSY M
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSYPQM 241
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 366 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSYTWM 253
P + P P PSS FPV + SPT+ P SSY M
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSYPQM 241
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 404 QSIYIPKGINVPSLAREVDWEFNPLNVKVGSHI 502
+S+ P+G N+PS R++D + N N +GS +
Sbjct: 163 RSVDPPRGRNIPSSRRKIDVDNNNYNHTLGSSV 195
>At3g01040.1 68416.m00005 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 533
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 332 LGPGILGSIFDGIQRPLKDINELTQSI---YIPKGINVP 439
LGP +LG I D QR ++D ++ + IP G+ +P
Sbjct: 77 LGPRLLGRIDDSEQRLVRDFYKILNEVSTQEIPDGLKLP 115
>At2g41820.1 68415.m05168 leucine-rich repeat transmembrane protein
kinase, putative
Length = 890
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 191 VRVGYNELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGK 316
+R+G NELVG I R G+++ + +E G+ V K
Sbjct: 259 IRIGNNELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSK 300
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 366 PSKMEPKIPGPSSTDKGFPVRSTGSPTV-TPEVSS 265
P PK+P PS P S SP+V TP V S
Sbjct: 42 PKVPSPKVPTPSVPSPYVPTPSVPSPSVPTPSVPS 76
>At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325, GI:4468259 from (Pichia
angusta); contains Pfam profiles PF00982:
Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 730
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 593 R*LFPWLWAGPTSCA*PECSRVQYHTNLH 507
R L +LWAGP S A E R +Y +H
Sbjct: 571 RDLLQYLWAGPISNASAEVVRGKYSVEVH 599
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,114
Number of Sequences: 28952
Number of extensions: 319094
Number of successful extensions: 996
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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