Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f18r
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.49 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   4.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   6.0  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    26   6.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   7.9  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 446 NDCFTDEECLLSVNSLRQHHMLLAGFKDLGYSFV 345
           N  FTDE+  + V  LRQ +++L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 137  GHQQLINTLSPGAVLQSEIESWPHWLDNARKVL 39
            GHQ L+N     A L S+++S+  +++ A + L
Sbjct: 1328 GHQSLLNLREKRAFLDSQLKSYNEYIEQAMETL 1360


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 295 PIWFHPAPS*IFPLPPATNE*PKSLNPARS 384
           P +  PAP    PLPP T   P+   P RS
Sbjct: 37  PAFMEPAPVSKKPLPPPTRRLPRKPLPFRS 66


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = -3

Query: 476 DLVVIQHTVSNDCFTDEE---CL----LSVNSLRQ-HHMLLAGFKDLGYSFVAG 339
           +L ++ + + NDCFT  E   CL    LS N L +        F DL + FV+G
Sbjct: 810 ELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 538 ISPHSDAKVDNPAHVATMIKNRILFIVNK 624
           IS  +D+K+DN     T  +N+ILF ++K
Sbjct: 4   ISTSTDSKLDNLGLSVTSRRNQILFYLSK 32


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 337 PPATNE*PKSLNPARSI*CCRREFTLSKHSSSVKQSLDTVCCITTKSIGL 486
           P      P+  NP        +EF L K+  S+ Q    V  + T+S+G+
Sbjct: 424 PSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSILQKWPAVKSLPTESVGI 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,608
Number of Sequences: 5004
Number of extensions: 67081
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)