Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f18r
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18500.1 68415.m02156 ovate family protein 69% similar to ova...    30   1.7  
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac...    29   3.0  
At3g15510.1 68416.m01966 no apical meristem (NAM) family protein...    29   3.0  
At2g11345.1 68415.m01217 hypothetical protein similar to At3g426...    28   5.2  
At5g52100.1 68418.m06467 dihydrodipicolinate reductase family pr...    28   6.9  
At2g04100.1 68415.m00393 MATE efflux family protein similar to r...    28   6.9  
At1g58090.1 68414.m06583 F-box family protein contains F-box dom...    28   6.9  
At2g04040.1 68415.m00385 MATE efflux family protein contains Pfa...    27   9.1  

>At2g18500.1 68415.m02156 ovate family protein 69% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 315

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 422 CLLSVNSLRQHHMLLAGFKDLGYSFVAGGNG 330
           C LS+N+ R H  ++  F ++  +  +GG+G
Sbjct: 266 CFLSLNAKRHHRAIVRAFSEIWVALFSGGSG 296


>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
           acetohydroxy-acid synthase (ALS) nearly identical to
           SP|P17597 Acetolactate synthase, chloroplast precursor
           (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
           synthase) (ALS) {Arabidopsis thaliana}
          Length = 670

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 331 PLPPATNE*PKSLNPARSI*CCRREFTLSKHSSSVKQSLDTVCCITT 471
           PLP +    P SLNP +S    RR    S   SS+   L+T   +TT
Sbjct: 28  PLPISRFSLPFSLNPNKSSSSSRRRGIKSSSPSSISAVLNTTTNVTT 74


>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
           (NAC2) identical to AtNAC2 [Arabidopsis thaliana]
           GI:12060426; contains Pfam PF02365: No apical meristem
           (NAM) domain; similar to jasmonic acid 2 GB:AAF04915
           from [Lycopersicon esculentum]
          Length = 364

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 407 NSLRQHHMLLAGFKDLGYS-FVAGGNGKIYEGAGW-NHIGAHTLHYNNISIGIG 252
           N  R  +     F   GY  F  GGN  IY+G G  N+IG  ++ ++N +  +G
Sbjct: 220 NVSRSMNFFPGKFSGGGYGIFSDGGNTSIYDGGGMINNIGTDSVDHDNNADVVG 273


>At2g11345.1 68415.m01217 hypothetical protein similar to At3g42690,
           At4g04130
          Length = 138

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 242 DFREKLPTQQALQAVQDFLACGVENNLLTE 153
           +FR+KLPT+  ++A QD     V N L  E
Sbjct: 29  EFRDKLPTESEVEAHQDPACLSVWNRLFGE 58


>At5g52100.1 68418.m06467 dihydrodipicolinate reductase family
           protein weak similarity to dihydrodipicolinate reductase
           [Corynebacterium glutamicum] GI:311768; contains Pfam
           profiles PF01113: Dihydrodipicolinate reductase
           N-terminus, PF05173: Dihydrodipicolinate reductase
           C-terminus
          Length = 298

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 559 SRPNAAKFPSPNGVARSHVVNNL 491
           SRPNAA  PSP  +  ++ ++NL
Sbjct: 189 SRPNAADLPSPEAIQIANNISNL 211


>At2g04100.1 68415.m00393 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 483

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 386 MLLAGFKDLGYSFVAGGNGKIYEGAGWNHIGA 291
           +L   F   G+S V GG   +  G+GW HIGA
Sbjct: 379 LLCISFLVDGFSAVLGG---VARGSGWQHIGA 407


>At1g58090.1 68414.m06583 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 371

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
 Frame = -3

Query: 458 HTVSNDCFTDEECLLSVNSLRQHHMLLAGFKDLG--------YSFVAGGNGKIYEGAGWN 303
           +++S D   DE   + V  LR  H+   G+   G        YSF+ GG G ++    W 
Sbjct: 63  YSISVD-LKDENPTIKVRDLRFDHLSCRGYHLYGICDGNFFMYSFLNGGGGVVWNPLFWR 121

Query: 302 HIGAHTLHYNNISIGIGFIGDFREK 228
                    N     IG+ G   EK
Sbjct: 122 QTKWIAKAENTCGKAIGYDGSRPEK 146


>At2g04040.1 68415.m00385 MATE efflux family protein contains Pfam
           profile: PF01554 uncharacterized membrane protein family
          Length = 476

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 350 FVAGGNGKIYEGAGWNHIGA--HTLHYNNISIGIGFIGDFREKL 225
           F A  NG +  G+GW HIGA  +T+ Y  +   +G    F  +L
Sbjct: 386 FTAVLNG-VARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSREL 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,160
Number of Sequences: 28952
Number of extensions: 352217
Number of successful extensions: 861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)