Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f18f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.40 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   3.7  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.9  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    26   4.9  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   6.5  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   8.6  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   8.6  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    25   8.6  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.6  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 273 NDCFTDEECLLSVNSLRQHHMLLAGFKDLGYSFV 374
           N  FTDE+  + V  LRQ +++L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 424 PIWFHPAPS*IFPLPPATNE*PKSLNPARS 335
           P +  PAP    PLPP T   P+   P RS
Sbjct: 37  PAFMEPAPVSKKPLPPPTRRLPRKPLPFRS 66


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = +3

Query: 243 DLVVIQHTVSNDCFTDEE---CL----LSVNSLRQ-HHMLLAGFKDLGYSFVAG 380
           +L ++ + + NDCFT  E   CL    LS N L +        F DL + FV+G
Sbjct: 810 ELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 181 ISPHSDAKVDNPAHVATMIKNRILFIVNK 95
           IS  +D+K+DN     T  +N+ILF ++K
Sbjct: 4   ISTSTDSKLDNLGLSVTSRRNQILFYLSK 32


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -1

Query: 382 PPATNE*PKSLNPARSI*CCRREFTLSKHSSSVKQSLDTVCCITTKSIGL 233
           P      P+  NP        +EF L K+  S+ Q    V  + T+S+G+
Sbjct: 424 PSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSILQKWPAVKSLPTESVGI 473


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 539 TG*KVLDRLQCLLGRQLLPKVSNETDPYGY 450
           TG +++ ++  LLG  +LP + N  D  G+
Sbjct: 547 TGVRIIQQIALLLGCSILPHLKNLVDCIGH 576


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 106 IVNKRSAFTKKHEFYV*KELYGNYIIMELI**GKP 2
           I N R   T++    +  + YGNY+I ++I  G+P
Sbjct: 618 ITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQP 652


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 229 RGCLRRDSVPLHSVMGISPHSD 164
           +GCL++D+V +  + G+S   D
Sbjct: 132 KGCLKKDAVAISCIKGVSVTKD 153


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 486 EKLPTQQALQAVQDFLACGVENNLLTE 566
           EKLP   A   + D + C    +LLTE
Sbjct: 149 EKLPPSSAEDGIYDLVICSFALHLLTE 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,614
Number of Sequences: 5004
Number of extensions: 58413
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)