Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f15r
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   6.4  
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.5  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 460 SHQSNQNTICKIKMFYNFQVKPYIQLSTQTGS 365
           S   N   +C+ K FY  Q +P+  L +   S
Sbjct: 175 SSSQNPGLVCEQKTFYQHQFRPFSNLPSNKSS 206


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 379 LIAVCTVSPGNYRTSLFYRLCFDLTGDLFPISFRYLV*Y**LIKLSYC 522
           LI  CTVS    + +LF   C  ++  L P    YLV +  LI++  C
Sbjct: 92  LIHNCTVSVAICKHALFVDKCRSISNKLGPREQVYLVGFDTLIRILDC 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,979
Number of Sequences: 5004
Number of extensions: 45775
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)