Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f15r
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           28   6.8  
SB_58791| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 615 LFIIS*LHYVMV*TPCCSKLITFKYHPLH 529
           +FIIS +  V++ TP C  +IT  +HPLH
Sbjct: 416 IFIISVIT-VIITTPSCIAIITVIHHPLH 443


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 397 VSPGNYRTSLFYRLCFDLTGDLFPIS 474
           V PGNY    FY LC  + G+ FPI+
Sbjct: 378 VGPGNYTGMTFYWLC-KVKGESFPIA 402


>SB_58791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -3

Query: 476 NDIGNKSPVKS-KHNL*NKDVL*FPGETVHTAINTNWEPVIRDIAPVAFEQIIKACVDEA 300
           +D+  +  V S +H L  K+V  F  ET+  +++   E   R +A +  + ++K  +   
Sbjct: 192 DDMYGRGVVTSLRHQLKRKNVCIFAEETIRDSVSQAAEDAKRIVAKIKEKVLVKVTILLT 251

Query: 299 KKLFATVPVNE 267
            K+ A+   NE
Sbjct: 252 SKIAASALFNE 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,360,162
Number of Sequences: 59808
Number of extensions: 291652
Number of successful extensions: 423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)