Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f15r
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41034-7|AAN72427.1|  465|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF036687-1|AAM75374.1|  173|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U41034-7|AAN72427.1|  465|Caenorhabditis elegans Hypothetical
           protein M02D8.4b protein.
          Length = 465

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 277 GTVANSFFASSTHALIICSKATGAISLITGSQFVLIAVCTVSP---GNYRTSLFY 432
           GT  + F+ S       C    G +SL+    FVL+  CT SP   GN+ + LF+
Sbjct: 285 GTTHHEFYFS-IEVSRTCVSLFGILSLMMSHPFVLLLQCTSSPKKSGNWESKLFF 338


>U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical
           protein F38E1.6 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 295 FFASSTHALIICSKATGAISLITGSQFVLIAVCTVSPG 408
           +FA +   LII S+ +  ISL+   + +LIAVC V  G
Sbjct: 46  YFAFNVFHLIILSRPS-LISLVVSKEMILIAVCGVLNG 82


>AF036687-1|AAM75374.1|  173|Caenorhabditis elegans Hypothetical
           protein C08G9.1 protein.
          Length = 173

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 297 FCLINACFDNLF-KGDWCYISDHR 365
           FC  ++C DNL  +GD+C+I  HR
Sbjct: 28  FCDRDSCDDNLLCQGDFCFIGLHR 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,471,008
Number of Sequences: 27780
Number of extensions: 241720
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)