Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f15f
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38749| Best HMM Match : SASP_gamma (HMM E-Value=4.1)                29   3.1  
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  29   3.1  
SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_15009| Best HMM Match : TP2 (HMM E-Value=3.3)                       27   9.6  

>SB_38749| Best HMM Match : SASP_gamma (HMM E-Value=4.1)
          Length = 155

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 516 AKLHAKKISAHTSSKYFKDRTHSELK*AAEAKIKNQIKLLNCR 388
           A + A +  + TS+KYF+ RT  + K AA AK         CR
Sbjct: 53  ATVGASEARSGTSAKYFRGRTGRQKKAAANAKKARATTSTRCR 95


>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 632 GDENPCSKNTIVQNLHTLQMIIKFVQRNTRNANVLNQSLLNYMQKR*VRI 483
           GD   C  ++ +QN        K +Q NT   +V+ + L   +Q R VRI
Sbjct: 419 GDSRDCPADSYIQNGIACNQSEKLIQANTNRNSVVARPLSPKVQARYVRI 468


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -2

Query: 211 TDSFIFLMNIIVRGRSQGYLKLWVSHQ---YRTSNFNLPLTQ 95
           TDSF+   NII+R  S+  L L ++H     R+SN N+ + +
Sbjct: 682 TDSFVERWNIILRSASEMLLDLLINHHNEALRSSNQNIQVME 723


>SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 217 IRTDSFIFLMNIIVRGRSQGYLKLWVSHQYRTSNFNL 107
           I+  + I  M+ +++G ++  L LW S  Y++  FN+
Sbjct: 38  IKRGTSIDYMHCVLQGITKSLLNLWFSSSYKSEAFNI 74


>SB_15009| Best HMM Match : TP2 (HMM E-Value=3.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 483 TSSKYFKDRTHSELK*AAEAKIKNQIKLLNCR 388
           TS+KYF+ RT  + K AA AK         CR
Sbjct: 114 TSAKYFRGRTGRQKKAAANAKKARATTSTRCR 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,870,877
Number of Sequences: 59808
Number of extensions: 301677
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)