Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f13r
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 78 1e-15
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.17
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.2
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 28 1.6
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 27 2.8
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 3.6
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 3.6
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 26 6.4
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 8.4
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 8.4
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 25 8.4
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 77.8 bits (183), Expect = 1e-15
Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
Frame = -1
Query: 732 IMLXRNNGYAISTPTSEQYRGDGIASRGPALGLHTLRVDGTDTLAVHNAVKRARDFTVAN 553
I NN Y + T RG + L V+G D LAV A K A+ +TV N
Sbjct: 236 IFACENNKYGMGTSAERSSAMTEFYKRGQYIP--GLLVNGMDVLAVLQASKFAKKYTVEN 293
Query: 552 NKPVLIEAMAYRVGHHSTSDDSSAYRSVEEIQKWTKDESPLQKFKLYLEHKGYWDAETEK 373
++P+L+E + YR G HS SD + YRS EE+QK P++ K ++ G +A K
Sbjct: 294 SQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKHIMEWGVANANELK 353
Query: 372 AWSKEARDTVVRTMQEAEKKKKPN--WKEMLEDVYYE-MPPRLQKQMKQMEEHLKK 214
K R V ++ AE+ P+ + + DVY P + +E H K
Sbjct: 354 NIEKRIRGMVDEEVRIAEESPFPDPIEESLFSDVYVAGTEPAYARGRNSLEYHQYK 409
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.17
Identities = 23/94 (24%), Positives = 38/94 (40%)
Frame = -1
Query: 507 HSTSDDSSAYRSVEEIQKWTKDESPLQKFKLYLEHKGYWDAETEKAWSKEARDTVVRTMQ 328
HST+ S +S + T D+S F G+ + +++ K+ + Q
Sbjct: 144 HSTTPSSLKMKSSISLAAITADDSLHNSFSSNDIDDGFQTVTSSRSYGKKKSTEPLTKRQ 203
Query: 327 EAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEE 226
++KK KEM E E RL K++ E
Sbjct: 204 RQNQQKKLRAKEMQELADEEQRRRLAAHRKELHE 237
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 301 VWFLFLFRFLHGSNHCIPCFLTPGLLS 381
+W L +FRF HG C P G +S
Sbjct: 197 IWSLVIFRFFHGFFGCTPMSACGGTIS 223
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Frame = -1
Query: 375 KAWSKEARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQ-MKQMEEHLKKYPEHY 199
+ W+K RD+ + +Q++ K +E L+ Y +P LQ + + L ++P
Sbjct: 373 QVWAKIYRDSQINILQDSITYVKNYMEESLQKTYKPLPNLLQYLILNSISIFLLQHPLFA 432
Query: 198 PLNQ---------HESD*ITTADIHIVKIIFMVYCL 118
PL+ + T + I+ I+ VYCL
Sbjct: 433 PLSHAIESLYGSTDAEALVATDEQDILMILICVYCL 468
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/81 (20%), Positives = 34/81 (41%)
Frame = -1
Query: 393 WDAETEKAWSKEARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKK 214
WD + WS++ + R + + + N E L + + + + K
Sbjct: 2 WDGFSNSFWSRDYITGINRAQRLINEGVEQN--EKLLQLLHIRAKSASSCSDLLFKSFSK 59
Query: 213 YPEHYPLNQHESD*ITTADIH 151
+ +H+PLN+ +D + A IH
Sbjct: 60 FNKHHPLNEESNDLPSDAAIH 80
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 339 RTMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEE 226
R +++AE+K + W++ YE +Q + K EE
Sbjct: 125 RKLEKAERKIRAKWEKRTIKAEYESSKLVQPEQKSYEE 162
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 728 CXAETTATRYLHPQANNTAETASLLGDQP 642
C T L P NNTA ++SL+ D P
Sbjct: 662 CIPPVTQASSLVPSKNNTASSSSLMLDSP 690
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 292 LFPVWFLFLFRFLHGSNHCIPCFLTPGLLSLRVPV 396
L+P W+L L +HG+ +P S+ PV
Sbjct: 314 LWPFWWLLLKGTIHGAQSFFHAICSPEFASITQPV 348
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -1
Query: 294 EMLEDVYYEMPPRLQKQMKQMEEHLK---KYPE 205
E + D YEM L+KQ+K+++E ++ K+PE
Sbjct: 137 EKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPE 169
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 504 STSDDSSAYRSVEEIQKWTKDES 436
STSD S AY SVE++ +T +S
Sbjct: 993 STSDFSCAYNSVEDLYAFTSMKS 1015
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 363 KEARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMP 262
KE + +TM++ E+K +P+ K+ ED+ + P
Sbjct: 153 KEKDNESDKTMKDVEEKTEPSLKKEEEDIQMKEP 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,087
Number of Sequences: 5004
Number of extensions: 52655
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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