Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f13r
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13) 153 1e-37
SB_15625| Best HMM Match : E1_dh (HMM E-Value=0) 73 2e-13
SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4) 32 0.42
SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21) 32 0.55
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24) 31 0.96
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 31 1.3
SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046) 30 1.7
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24) 30 2.2
SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_40005| Best HMM Match : Vicilin_N (HMM E-Value=0.11) 29 3.9
SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0) 29 3.9
SB_11073| Best HMM Match : Protamine_3 (HMM E-Value=1.4) 29 3.9
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 3.9
SB_45541| Best HMM Match : Protamine_3 (HMM E-Value=1.4) 29 3.9
SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16) 29 5.1
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 5.1
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 28 6.8
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 28 6.8
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 6.8
SB_35499| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.2) 28 9.0
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0) 28 9.0
SB_29634| Best HMM Match : Endonuclease_7 (HMM E-Value=8.2) 28 9.0
>SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)
Length = 238
Score = 153 bits (371), Expect = 1e-37
Identities = 73/178 (41%), Positives = 106/178 (59%)
Frame = -1
Query: 732 IMLXRNNGYAISTPTSEQYRGDGIASRGPALGLHTLRVDGTDTLAVHNAVKRARDFTVAN 553
+ L RNN YAISTP +QY DGIA R A+GL T RVDG D +A +A ++AR + V
Sbjct: 52 LFLCRNNKYAISTPVEDQYTSDGIAPRAVAMGLATARVDGNDAVACLHATQQARKYIVEQ 111
Query: 552 NKPVLIEAMAYRVGHHSTSDDSSAYRSVEEIQKWTKDESPLQKFKLYLEHKGYWDAETEK 373
KP +E M YR+G HSTSD+S+ YRS +E + W + P+++ +L G D E+
Sbjct: 112 KKPYFLEFMTYRLGDHSTSDNSALYRSEDERKFWKEKNDPIKRLTSFLTKAGVKDMPNEE 171
Query: 372 AWSKEARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPEHY 199
+ R V T+ + K K P+ + +DVY ++P LQ+Q K+++EHL+ Y Y
Sbjct: 172 SERATTRKAVTETLHKCYKHKFPSVLSLFDDVYDKLPLHLQEQKKELQEHLQNYSHKY 229
>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
Length = 352
Score = 73.3 bits (172), Expect = 2e-13
Identities = 46/153 (30%), Positives = 69/153 (45%)
Frame = -1
Query: 732 IMLXRNNGYAISTPTSEQYRGDGIASRGPALGLHTLRVDGTDTLAVHNAVKRARDFTVAN 553
I + NNGY + T SRG + +RVDG D L V A K A D+ +
Sbjct: 180 IFICENNGYGMGTSVERAAATTEYYSRGDYIP--GIRVDGMDVLTVREATKWAVDYARSG 237
Query: 552 NKPVLIEAMAYRVGHHSTSDDSSAYRSVEEIQKWTKDESPLQKFKLYLEHKGYWDAETEK 373
P+L+E YR HS SD ++YRS +EIQ K P+ + L G + K
Sbjct: 238 KGPILMELKTYRYYGHSMSDPGTSYRSRDEIQSVRKTRDPITGLREKLLDSGLASTDDIK 297
Query: 372 AWSKEARDTVVRTMQEAEKKKKPNWKEMLEDVY 274
+EA+ + ++ A+ +P ++ VY
Sbjct: 298 KIEQEAKAEIDEAVECAKNDPEPPLDDLFMHVY 330
>SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4)
Length = 487
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -2
Query: 464 RYKSGPKMRVLCRSSSFISNIKVTGTRRLRRPGVRKQGIQW 342
R+ +GP+ +L ++S S +++ GTR + P + +G QW
Sbjct: 422 RWDTGPQNSLLVKASEAPSRMRIGGTRIVEYPDDKTRGYQW 462
>SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21)
Length = 620
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = -1
Query: 411 LEHKGYWDAETEKAWSKEARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQM 232
L+ YW + AW++ R + M++ K+K P +D+ +++ + +
Sbjct: 378 LQRNSYWKTQRVTAWAQRFRANALAKMRKENKRKGP---LTTDDI---AQAEMEEVVVDI 431
Query: 231 EEHLKKYPEHYPLNQHESD*ITTADI 154
E HL P Y + + D + T +I
Sbjct: 432 ERHLNNRPLTYVESDNGEDHVLTPNI 457
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 31.5 bits (68), Expect = 0.73
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Frame = -1
Query: 447 KDESPLQKFKLYLEHKGYWDAETEKAW--SKEARDTVVRTMQEAEKKKKPNWK-----EM 289
K+ QK + E + E EK +E R V + QE EK K N K +
Sbjct: 191 KEREKQQKLDMEKEERRRRQQEEEKKRREEEEKRKKVEKEKQEREKAAKKNIKRQQQQQR 250
Query: 288 LEDVYY--EMPPRLQKQMKQMEEHLKKYPEHYP 196
+ Y E+PPR QK +Q ++ + P P
Sbjct: 251 TDQQQYPREIPPRFQKMKRQQQQQQLQTPNLPP 283
>SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24)
Length = 683
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = -1
Query: 441 ESPLQKFKLYLEHKGYWDAETEKAWSKEARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMP 262
E LQ+ K E K + +TEK E + + +E EK+K+P K L+ +M
Sbjct: 343 EEELQEEKTETEEKTDTEEKTEKEEKTENEEKPKQKEKEKEKEKRPASK--LDKKTQKMI 400
Query: 261 PRLQKQMKQMEE 226
LQ+ KQM E
Sbjct: 401 ADLQRCKKQMVE 412
>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
Length = 798
Score = 30.7 bits (66), Expect = 1.3
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Frame = -1
Query: 564 TVANNKPVLIEA------MAYRVGHHSTSDD-SSAYRSVEEIQKWTKDESPLQKFKLYLE 406
++ NNKP+ ++ ++ + H S++ +S Y+ VEE+ K + F
Sbjct: 207 SINNNKPITVQIPFGAANLSSQYDHRLQSNEPTSGYKEVEELSN--KKNLQAKSFT---- 260
Query: 405 HKGYWDAETEKA---WSKEARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQ 235
++ Y E EK+ +S R T +E K N L D +P K K
Sbjct: 261 NQSYIPKEIEKSPNEFSVALRSVSHNTTKEDSILKGKNEVNKLRDNLKSLPTFTFKDTKA 320
Query: 234 M-----EEHLKKYPEHYPLNQHES 178
+ LKK PEH PL++ E+
Sbjct: 321 ETVTFEKPFLKKAPEHKPLDEVEA 344
>SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 566 KSLALFTALCTARVSVPSTLSVWSP 640
+ L L A+ TA+ + PS+LS+WSP
Sbjct: 615 RGLPLLAAMVTAQSTTPSSLSLWSP 639
>SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)
Length = 940
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 306 PNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPEHYPLN 190
P+W + D + +PP LQ + + +E K +PLN
Sbjct: 391 PDWYQQELDSSFAIPPELQSEHQAIEAEFKAMNNPFPLN 429
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/109 (22%), Positives = 47/109 (43%)
Frame = -1
Query: 504 STSDDSSAYRSVEEIQKWTKDESPLQKFKLYLEHKGYWDAETEKAWSKEARDTVVRTMQE 325
ST+D+ + E K ++DE +K + E + E E+ +E + Q
Sbjct: 410 STTDEEKERKKSETKNKDSEDEEKERKKREAEEEEERRREEEERREEEERKREEEERKQR 469
Query: 324 AEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPEHYPLNQHES 178
E++KK +E + E + +++ K+ +E +K+ E ES
Sbjct: 470 EEEEKKREEEERKQREEEERKQKEKEEEKKRKEEERKHKEEEEKKTEES 518
>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
Length = 1193
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 557 ATVKSLALFTALCTARVSVPSTLSVWSPRAGPREAMPSPRYCSLV 691
A+ + L ++ T + V L WS RAG R AM P + S V
Sbjct: 109 ASYMQMGLVLSVSTPSLLVALLLGAWSDRAGRRRAMAMPIFGSAV 153
>SB_49860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = -1
Query: 468 EEIQKWTKDESPLQKFKLYLEHKGYWDAETEKA--WSKEARDTVVRTMQEAEKK-KKPNW 298
EE +K K+E L++ K + E E EK E R R + EK+ KK
Sbjct: 168 EEEEKKRKEEEELERRK-HQERMEIQRREAEKVKQMMDELRKKEERRRKREEKRRKKKEE 226
Query: 297 KEMLEDVYYEMPPRLQKQMKQMEEHLK 217
+E LE + R+ ++ K++EE K
Sbjct: 227 QERLEQQRRQREQRIAEKRKRLEEQRK 253
>SB_40005| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
Length = 248
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = -1
Query: 480 YRSVEEIQKWTKDESPLQK---FKLYLE--HKGYWDAETE--KAWSKEARDTVVRTMQEA 322
Y S E QKW K L++ FK+ K + + K KE RD+ V M +
Sbjct: 38 YASKERGQKWDKIALNLKENHGFKVTQRSVRKRFNSLHEDFLKKEKKEKRDSGVEVMYDE 97
Query: 321 EKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPE 205
+ + ++ E++ED E R+ + E+ KK E
Sbjct: 98 KHQMLTDYNELIEDWETERKERVDDEKVMAEDMRKKATE 136
>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
Length = 1031
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 591 NAVKRARDFTVANNKPVLIEAMAYRVGHHSTSDDSSAYRSVEEIQKWTKDESPLQKF 421
N VKR D A+++P+ I+ + +G T DD+S + + Q T E ++ F
Sbjct: 568 NVVKRLNDVIQASDRPI-IDLVGGTLGDDVTLDDNSKFGELGHAQMVTAVERGMKYF 623
>SB_11073| Best HMM Match : Protamine_3 (HMM E-Value=1.4)
Length = 240
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = -1
Query: 480 YRSVEEIQKWTKDESPLQK---FKLYLE--HKGYWDAETE--KAWSKEARDTVVRTMQEA 322
Y S E QKW K L++ FK+ K + + K KE RD+ V M +
Sbjct: 38 YASKERGQKWDKIALNLKENHGFKVTQRSVRKRFNSLHEDFLKKEKKEKRDSGVEVMYDE 97
Query: 321 EKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPE 205
+ + ++ E++ED E R+ + E+ KK E
Sbjct: 98 KHQMLTDYNELIEDWERERKERVDDEKVMAEDMRKKATE 136
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 319 KEKETKLERDARRCLL*NATQASKTNEANGGTSKEVSRALPAQSTRERLNNYCRYS 152
KEKE ++E + T +++T +GG+ AL + ERL Y ++S
Sbjct: 538 KEKEKEIELLKEKLNTTIDTPSNETEHFDGGSGNNKYEALKSDFEEERLKEYAKWS 593
>SB_45541| Best HMM Match : Protamine_3 (HMM E-Value=1.4)
Length = 226
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = -1
Query: 480 YRSVEEIQKWTKDESPLQK---FKLYLE--HKGYWDAETE--KAWSKEARDTVVRTMQEA 322
Y S E QKW K L++ FK+ K + + K KE RD+ V M +
Sbjct: 74 YASKERGQKWDKIALNLKENHGFKVTQRSVRKRFNSLHEDFLKKEKKEKRDSGVEVMYDE 133
Query: 321 EKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPE 205
+ + ++ E++ED E R+ + E+ KK E
Sbjct: 134 KHQMLTDYNELIEDWERERKERVDDEKVMAEDMRKKATE 172
>SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)
Length = 807
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -1
Query: 375 KAWSKEARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPE 205
K KE RD+ V M + + + ++ E++ED E R+ + E+ KK E
Sbjct: 209 KKEKKEKRDSGVEVMYDEKHQMLTDYNELIEDRERERKERVDDEKVMAEDMRKKATE 265
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 471 VEEIQKWTKDE--SPLQKFKLYLEHKGYWDAETEKAWSKEARDTVVRTMQEAEKKKK 307
+E++ + K+E P K LYL +G ++ A D + R EAEKK K
Sbjct: 502 LEQMSRQQKEERRDPKDKRNLYLAREGVIKPGSDAAKDLSKADLLKRQKAEAEKKSK 558
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = -3
Query: 280 CLL*NATQASKTNEANGGTSKEVSRALPAQSTRERLNNYCRYSHC*NYFYGLLSFRCFYS 101
C AT + T A T+ + + YC Y +C Y Y + C+Y
Sbjct: 433 CATATATATAATTAATATTTTATTTTTTTTTAPVLRYCYC-YCYCYYYCYCYCYYYCYYY 491
Query: 100 IYC 92
YC
Sbjct: 492 CYC 494
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 28.3 bits (60), Expect = 6.8
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Frame = -1
Query: 513 GHHSTSDDSSA-YRSVEEIQKWTKDESPLQKFKLYLEHKGYWDAETEKAWSKEARDTVVR 337
G +D + A S+E + T++ + +LY HK E E+A +KE + ++
Sbjct: 39 GKRKLADSNEAKIASLETTLRRTQEHENQVRQELYNTHKRLTALEHEQASNKERQKSLQD 98
Query: 336 TMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPEHYPLNQHESD 175
Q AE+K ++ ED QK++ + E +L+ + Q ES+
Sbjct: 99 AYQSAEEKA----LKLKEDYMIS-----QKKLSETEANLENAQQKIEALQKESE 143
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 28.3 bits (60), Expect = 6.8
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +2
Query: 437 LSSLVHFCISSTDLYALLSSDVE*CPTR*AIASMSTGLLLATVKSLALFTALCTARVSVP 616
LS VH+C+S T Y LS V C + +S + L ++ ++C +
Sbjct: 350 LSVTVHYCLSVTVHYC-LSVTVHCCLSVTVHYCLSVTVCLLLSITVCPLLSVCYCPLLSV 408
Query: 617 STLSVWSPRAGPREAMPSPRYCSLVGV 697
S+ S R GP + S RYC L+ V
Sbjct: 409 CYCSLLSVRYGP---LLSVRYCPLLSV 432
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.3 bits (60), Expect = 6.8
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = -1
Query: 519 RVGHHSTSDDSSAYRSVEEIQKWTKDESPLQKFKLYLEHKGYWDAETEKAWSKEARDTVV 340
++G S + R +EI + + + + L+H E +K KE R+TV
Sbjct: 604 KLGATSQEREDLKLRYEDEIDRLNRKLKWYAENQQLLDHDAAALKEKDKEL-KELRETVS 662
Query: 339 RTMQE---AEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLK-KYPEHYP 196
R + A +++ E D + LQ+Q+K+MEE +K +YP P
Sbjct: 663 RLRAQQGSAATERRQRSAERSSDA--KRIQDLQRQVKEMEEIIKRRYPNSLP 712
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.3 bits (60), Expect = 6.8
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Frame = -1
Query: 513 GHHSTSDDSSA-YRSVEEIQKWTKDESPLQKFKLYLEHKGYWDAETEKAWSKEARDTVVR 337
G +D + A S+E + T++ + +LY HK E E+A +KE + ++
Sbjct: 2567 GKRKLADSNEAKIASLETTLRRTQEHENQVRQELYNTHKRLTALEHEQASNKERQKSLQD 2626
Query: 336 TMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPEHYPLNQHESD 175
Q AE+K ++ ED QK++ + E +L+ + Q ES+
Sbjct: 2627 AYQSAEEKA----LKLKEDYMIS-----QKKLSETEANLENAQQKIEALQKESE 2671
>SB_35499| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.2)
Length = 263
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 363 KEARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKK 214
KE + + +E E+K+ WK E E +L+++++ ++ L K
Sbjct: 178 KEESERRLEEFREEERKRMEQWKVQQEQESKEREQKLEEEVQNLKSELLK 227
>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 384
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 390 DAETEKAWSKEARDTVVRTMQEAEKKKKPNWKEM-LEDVYYEMPPRLQKQMKQMEEHLKK 214
D +K E V ++ EKKKK E L + +M +L++Q+K++EE KK
Sbjct: 296 DDHEKKLKKMEQEMEQVFDIKVKEKKKKLKDSEAELGKKHEQMTNQLEQQLKELEEKRKK 355
Query: 213 Y 211
+
Sbjct: 356 F 356
>SB_29634| Best HMM Match : Endonuclease_7 (HMM E-Value=8.2)
Length = 111
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 461 YKSGPKMRVLCRSSSFISNIKVTGTRRLRRP-GVRKQGIQWLEPCRKRKRKR 309
Y P+ V CR I + RRL RP G + G QW+ ++R RKR
Sbjct: 50 YGHPPRRAVPCR----ICGVGTRSERRLCRPCGANRVG-QWMRVVQRRARKR 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,137,559
Number of Sequences: 59808
Number of extensions: 421121
Number of successful extensions: 1735
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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