Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f13f
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 40 3e-04
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 28 1.2
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 27 1.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.8
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 3.8
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 3.8
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 5.0
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 26 5.0
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 8.7
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 39.9 bits (89), Expect = 3e-04
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
Frame = +1
Query: 205 EPIPIYRVMDN--NGQIID-KNEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRI-S 372
+P P+ ++ D+ G ID + E + K L+ +Y+ MV + ++ + +I
Sbjct: 48 KPFPV-KLDDSVFEGYKIDVPSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRG 106
Query: 373 FYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKGR 552
F + G+E + G A++ D + + YR G RG+++ ++ + G KG+
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGK 166
Query: 553 QMPVHYGSKH----HNMVTISSPLG 615
+H +K+ + +V PLG
Sbjct: 167 GGSMHIFAKNFYGGNGIVGAQIPLG 191
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 335 LSIWLSCTMVLYMLISVALSKF-GSSFLSMI 246
LSIW S M+LY L+ V F GSS +S++
Sbjct: 237 LSIWQSLVMILYYLLYVLFVFFSGSSGVSVV 267
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 169 VSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSH 327
+SE+++ + +P Y + D DK+ PN+D + + T+V L +
Sbjct: 592 LSEIRYSLRELVQDLPSYSLFDTLWVFYDKHIYPNVDPDYISTLIDTLVSLEN 644
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 384 QLRRGGHPHRQRLGTLTERFGLQSIQRS-RSVFIPRDDCDGTCEPVLR 524
++RR G +RQ T +RF + S + S + + D CE +L+
Sbjct: 641 RIRRAGFAYRQAFDTFAQRFAVLSGKTSYAGEYTWQGDDKSACEQILK 688
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 523 RNTGSQVPSQSSLGIKTLLLLCI 455
+NTG+ +P Q S ++ L LLC+
Sbjct: 711 QNTGAAIPLQISTNLRLLPLLCL 733
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 184 FFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQ 318
+F ++Y+ I +DNN ++D N PN + ++ + Y + Q
Sbjct: 268 YFPNSTYQNI--LNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQ 310
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 546 FPRILAVSVTLVHKFRHSHPSV*KH 472
FP+ A+SV + HK RH H V KH
Sbjct: 874 FPKS-ALSVRVKHKRRHRHDRVMKH 897
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -1
Query: 171 HVRCSCARKFCYLTTAILCRFGPRTRRQKPSS 76
H+ C C FC+L A L P P S
Sbjct: 383 HMNCLCGTHFCFLCGAYLMEQNPYKHFNDPVS 414
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 202 YEPIPIYRVMD-NNGQIIDKNEEPNLDKATLINMYKTMVQLSHM 330
Y+ + + RV+ + Q+ ++ NLDK L+N K+ + HM
Sbjct: 134 YKILSLLRVVTFDKDQVYAVGQKYNLDKNNLVNDNKSQSTIPHM 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,671
Number of Sequences: 5004
Number of extensions: 55529
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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