Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f13f
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)                172   2e-43
SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)                     30   1.7  
SB_7425| Best HMM Match : MAM (HMM E-Value=0.45)                       29   4.0  
SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032)                 28   6.9  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      27   9.1  
SB_6779| Best HMM Match : Lectin_C (HMM E-Value=2.2e-05)               27   9.1  

>SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)
          Length = 266

 Score =  172 bits (419), Expect = 2e-43
 Identities = 85/158 (53%), Positives = 107/158 (67%), Gaps = 2/158 (1%)
 Frame = +1

Query: 145 FPGA-RAPYVSEMKFFNETSYEPI-PIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQ 318
           +PGA    +  +++F +    + I P+YRVMD  G+II  + +P +   T    Y  M  
Sbjct: 50  YPGAMNCSFTEKLEFVDPMDPQGIIPVYRVMDRQGKIIIDSHDPKVTYCT----YLKMTL 105

Query: 319 LSHMDKILYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTV 498
           L+ MD+ILYESQRQGRISFYMTNYGEE  H GSA+AL  +DL+  QYRE GV ++RG T+
Sbjct: 106 LNTMDRILYESQRQGRISFYMTNYGEEATHFGSAAALEMEDLIMGQYREAGVLMWRGFTL 165

Query: 499 TELVNQCYGNCEDPGKGRQMPVHYGSKHHNMVTISSPL 612
            + +NQCY N  D GKGRQMPVHYGSK  N VTISS L
Sbjct: 166 ADFMNQCYANQHDAGKGRQMPVHYGSKELNFVTISSTL 203


>SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)
          Length = 324

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -1

Query: 261 IFVDDLSVIIHNSINRNWLITSFVEEFHFTHVRCSCARKFCYLTTAILCRFGPRTRRQKP 82
           +FV  +S I+   I+  WL+  +V+ F + H R    ++        + +   RT + KP
Sbjct: 210 LFVS-VSFIVLMVISLAWLVFYYVQRFRYVHARDKTEKRLSSAAKKAIAKLPTRTVK-KP 267

Query: 81  SSPSKSI 61
           SS    +
Sbjct: 268 SSTESQV 274


>SB_7425| Best HMM Match : MAM (HMM E-Value=0.45)
          Length = 300

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 292 INMYKTMVQLSHMDKILYESQRQGRISFYM 381
           +N+YK  +  +H+D I +++  QGR S ++
Sbjct: 103 LNVYKAQISTAHIDMIWFKTGNQGRNSDFV 132


>SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032)
          Length = 426

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -1

Query: 330 HMAQLYHGFVHVNQRSLIQV--RFFIFVDDLSVIIHNSINRNWLITSFVEEFHFTHVRCS 157
           H A L++      +R   QV  R  ++ DD +++ H+   +   +T F  E H  +    
Sbjct: 170 HNADLFNVAHFKAKRKTCQVIVREMLYADDSALVAHDVEMKRQTLTQFPGEIHVRNETLV 229

Query: 156 CARKFCYLTTAI 121
             + F YL + I
Sbjct: 230 QTKDFVYLGSTI 241


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
 Frame = +1

Query: 193 ETSYEPIPIYRVMDN-NGQIIDK--NEEPN-LDKATLINMYKTMVQLSHMDKILYESQRQ 360
           E+ +E  PIY    N +  I++   ++EP  L ++  + +Y    +  H+D + +  QR+
Sbjct: 174 ESDFENSPIYLACCNGHTSIVESLVSKEPMILHRSGQLLLYIAAYE-GHLDIVKFFIQRR 232

Query: 361 GRISFYMTNYGEEGIHIGSASAL 429
             I+   T   EEG+ + S  AL
Sbjct: 233 VNINHTGTIVNEEGVAVESLGAL 255


>SB_6779| Best HMM Match : Lectin_C (HMM E-Value=2.2e-05)
          Length = 181

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 374 NEMRPCLCDSYRILSIWLSCTM 309
           NE + C C S R LS+ LSCT+
Sbjct: 150 NEGKDCFCLSARNLSLCLSCTV 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,174,231
Number of Sequences: 59808
Number of extensions: 410125
Number of successful extensions: 1028
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)