Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f13f
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical ... 202 2e-52
AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical ... 202 2e-52
Z99271-4|CAB16474.1| 105|Caenorhabditis elegans Hypothetical pr... 67 1e-11
Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical pr... 38 0.008
M23366-1|AAA28114.1| 170|Caenorhabditis elegans myosin light ch... 30 1.1
M23365-1|AAA28113.1| 170|Caenorhabditis elegans myosin light ch... 30 1.1
AC024089-6|AAK09070.2| 170|Caenorhabditis elegans Myosin light ... 30 1.1
AC024089-5|AAK09069.1| 170|Caenorhabditis elegans Myosin light ... 30 1.1
Z19155-4|CAA79560.3| 844|Caenorhabditis elegans Hypothetical pr... 30 1.5
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 28 4.6
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 28 4.6
U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical pr... 28 4.6
U28928-2|AAA68335.2| 329|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 28 4.6
U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily ass... 28 6.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.1
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical
protein Y39E4A.3b protein.
Length = 432
Score = 202 bits (493), Expect = 2e-52
Identities = 87/152 (57%), Positives = 117/152 (76%)
Frame = +1
Query: 157 RAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDK 336
+A + +++ N +PIYRV + G +IDK+++PN D+ T + MYKTM QL+ MD+
Sbjct: 42 KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDR 101
Query: 337 ILYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQ 516
ILY+SQRQGRISFYMT++GEEG H+GSA+AL P+DL++ QYRE GV L+RG T+ +NQ
Sbjct: 102 ILYDSQRQGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQ 161
Query: 517 CYGNCEDPGKGRQMPVHYGSKHHNMVTISSPL 612
CYGN +D GKGRQMP+H+G+K N VTISSPL
Sbjct: 162 CYGNADDLGKGRQMPMHFGTKERNFVTISSPL 193
>AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical
protein Y39E4A.3a protein.
Length = 431
Score = 202 bits (493), Expect = 2e-52
Identities = 87/152 (57%), Positives = 117/152 (76%)
Frame = +1
Query: 157 RAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDK 336
+A + +++ N +PIYRV + G +IDK+++PN D+ T + MYKTM QL+ MD+
Sbjct: 41 KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDR 100
Query: 337 ILYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQ 516
ILY+SQRQGRISFYMT++GEEG H+GSA+AL P+DL++ QYRE GV L+RG T+ +NQ
Sbjct: 101 ILYDSQRQGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQ 160
Query: 517 CYGNCEDPGKGRQMPVHYGSKHHNMVTISSPL 612
CYGN +D GKGRQMP+H+G+K N VTISSPL
Sbjct: 161 CYGNADDLGKGRQMPMHFGTKERNFVTISSPL 192
>Z99271-4|CAB16474.1| 105|Caenorhabditis elegans Hypothetical
protein Y43F4A.4 protein.
Length = 105
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = +1
Query: 160 APYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDKI 339
A + +++ N +PIYRV + G +IDK+++PN D+ +L+ MYKTM QL+ MD+I
Sbjct: 42 AAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQSLLKMYKTMTQLNIMDRI 101
Query: 340 LYES 351
LY+S
Sbjct: 102 LYDS 105
>Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical
protein T05H10.6b protein.
Length = 414
Score = 37.5 bits (83), Expect = 0.008
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Frame = +1
Query: 259 NEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRISFYMTNY-GEEGIHIGSASALSP 435
N L++ + Y+ M + M+ ++ +I + Y G+E +G +A++
Sbjct: 62 NTSVTLNREDALKYYRDMQVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTE 121
Query: 436 KDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHYGSKH----HNMVTIS 603
D V + YR G G TVTE++ + G G+ +H +K+ + +V
Sbjct: 122 GDAVITAYRCHGWTWLLGATVTEVLAELTGRVAGNVHGKGGSMHMYTKNFYGGNGIVGAQ 181
Query: 604 SPLG 615
PLG
Sbjct: 182 QPLG 185
>Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical
protein T05H10.6a protein.
Length = 397
Score = 37.5 bits (83), Expect = 0.008
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Frame = +1
Query: 259 NEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRISFYMTNY-GEEGIHIGSASALSP 435
N L++ + Y+ M + M+ ++ +I + Y G+E +G +A++
Sbjct: 45 NTSVTLNREDALKYYRDMQVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTE 104
Query: 436 KDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHYGSKH----HNMVTIS 603
D V + YR G G TVTE++ + G G+ +H +K+ + +V
Sbjct: 105 GDAVITAYRCHGWTWLLGATVTEVLAELTGRVAGNVHGKGGSMHMYTKNFYGGNGIVGAQ 164
Query: 604 SPLG 615
PLG
Sbjct: 165 QPLG 168
>M23366-1|AAA28114.1| 170|Caenorhabditis elegans myosin light chain
2 protein.
Length = 170
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +1
Query: 247 IIDKNEEPNLDKATLINMYKTMVQL---SHMDKILYESQRQGRISFYMTNYGE 396
I+D+N++ +DK+ L ++Y +M Q+ S +D ++ E+ + ++T +GE
Sbjct: 35 IMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEASGPINFTVFLTLFGE 87
>M23365-1|AAA28113.1| 170|Caenorhabditis elegans myosin light chain
1 protein.
Length = 170
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +1
Query: 247 IIDKNEEPNLDKATLINMYKTMVQL---SHMDKILYESQRQGRISFYMTNYGE 396
I+D+N++ +DK+ L ++Y +M Q+ S +D ++ E+ + ++T +GE
Sbjct: 35 IMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEASGPINFTVFLTLFGE 87
>AC024089-6|AAK09070.2| 170|Caenorhabditis elegans Myosin light
chain protein 1 protein.
Length = 170
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +1
Query: 247 IIDKNEEPNLDKATLINMYKTMVQL---SHMDKILYESQRQGRISFYMTNYGE 396
I+D+N++ +DK+ L ++Y +M Q+ S +D ++ E+ + ++T +GE
Sbjct: 35 IMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEASGPINFTVFLTLFGE 87
>AC024089-5|AAK09069.1| 170|Caenorhabditis elegans Myosin light
chain protein 2 protein.
Length = 170
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +1
Query: 247 IIDKNEEPNLDKATLINMYKTMVQL---SHMDKILYESQRQGRISFYMTNYGE 396
I+D+N++ +DK+ L ++Y +M Q+ S +D ++ E+ + ++T +GE
Sbjct: 35 IMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEASGPINFTVFLTLFGE 87
>Z19155-4|CAA79560.3| 844|Caenorhabditis elegans Hypothetical
protein F54G8.5 protein.
Length = 844
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 536 SSQFP*HWFTSSVTVIPRYKNTPTSLY*LKTKSFGE----SAEALPMWMP 399
SS+ W ++ IPRYK T ++++ +KS + + E L WMP
Sbjct: 220 SSESTERWIDLFLSAIPRYKETNSTIFWSSSKSLAKEMERNGELLIPWMP 269
>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
protein 19,isoform a protein.
Length = 1783
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 200 LVSLKNFISLTYGALAPGNSAILPPPFCAVSGLVRVDKSLA 78
LV + +FI +TYG L PG + ++ F + ++R+ K L+
Sbjct: 1187 LVVVGSFIDITYGKLNPGGTNLISINFFRLFRVMRLVKLLS 1227
>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
protein 19,isoform b protein.
Length = 1877
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 200 LVSLKNFISLTYGALAPGNSAILPPPFCAVSGLVRVDKSLA 78
LV + +FI +TYG L PG + ++ F + ++R+ K L+
Sbjct: 1187 LVVVGSFIDITYGKLNPGGTNLISINFFRLFRVMRLVKLLS 1227
>U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical
protein F33G12.4 protein.
Length = 453
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 371 EMRPCLCDSYRILSIWLSCTMVLYMLISVALSKFGSSFLSMICPLLSI 228
EMR C S ++ + CTM + S++L FG + LS+ P+ +
Sbjct: 202 EMRSC---SLELIPVPAMCTMFRELPTSISLLDFGDNHLSIFPPIFHL 246
>U28928-2|AAA68335.2| 329|Caenorhabditis elegans Hypothetical
protein C44B7.4 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 246 LSVIIHNSINR-NWLITSFVEEFHFTHVRCSCARKFCYLTTAILCR 112
+ V+I +S+ WL F++ ++ RC + +FC ++ AILC+
Sbjct: 105 IEVLIQSSVAPIAWLFVVFLDGGYY---RCYRSHEFCLISDAILCK 147
>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
calcium channelalpha 1 subunit protein.
Length = 1783
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 200 LVSLKNFISLTYGALAPGNSAILPPPFCAVSGLVRVDKSLA 78
LV + +FI +TYG L PG + ++ F + ++R+ K L+
Sbjct: 1187 LVVVGSFIDITYGKLNPGGTNLISINFFRLFRVMRLVKLLS 1227
>U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily
assigned gene nameprotein 130 protein.
Length = 756
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +2
Query: 185 SSTKLVMSQFRFIELWIITDRSSTKMKNRTWIRLR*LTCTKPWYN*AIWIKFYMN 349
+S LV +F F +W + R +W+ R L+C P Y ++ +N
Sbjct: 566 ASMLLVSLEFYFKGIWTLNLRELRNSIRLSWVSSRHLSCVVPAYKARFFVILLLN 620
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 199 SYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRISFY 378
S P P +DNNG++I+++ + ++K T++N T++ ++ +D SQ QG +
Sbjct: 15719 SGRPQPEVIWIDNNGKVIEESRKMKIEK-TVLN---TVLTINSID-----SQDQGEFALK 15769
Query: 379 MTN-YGEEGIHIG 414
+ N GE+ IG
Sbjct: 15770 IKNRCGEDKYAIG 15782
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 199 SYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRISFY 378
S P P +DNNG++I+++ + ++K T++N T++ ++ +D SQ QG +
Sbjct: 15719 SGRPQPEVIWIDNNGKVIEESRKMKIEK-TVLN---TVLTINSID-----SQDQGEFALK 15769
Query: 379 MTN-YGEEGIHIG 414
+ N GE+ IG
Sbjct: 15770 IKNRCGEDKYAIG 15782
>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
protein T19A5.1 protein.
Length = 1280
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 372 ILYDQLRRGGHPHRQRLGTLTERF 443
+ YDQ++ G HPHR+ RF
Sbjct: 454 LFYDQIKYGAHPHRKCQRAQINRF 477
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,023
Number of Sequences: 27780
Number of extensions: 317924
Number of successful extensions: 925
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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