Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f12f
         (421 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   3.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   3.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   6.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 125 PXLVQIEVFLPILNQW 172
           P +  IE ++P+L QW
Sbjct: 496 PLITLIETWMPLLPQW 511


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 195 FSPTTTTFQLLPVSMENSTXL 257
           FSP+TTT      S  NST L
Sbjct: 6   FSPSTTTTTTTTSSALNSTPL 26


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 195 FSPTTTTFQLLPVSMENSTXL 257
           FSP+TTT      S  NST L
Sbjct: 6   FSPSTTTTTTTTSSALNSTPL 26


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 148 IPTHLESMVPTXRWYCSHQLPLPF 219
           +  HL S   T  W+  HQ   P+
Sbjct: 122 VVNHLSSDSTTIHWHGHHQKNSPY 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,986
Number of Sequences: 336
Number of extensions: 1463
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)