Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f12f
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   0.90 
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.8  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   6.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    24   8.4  

>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 96  RSLAVQLQTAASTATXKVRTETIVPIESN 10
           R L +  +  A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 211 LPFNCYLFPWRILRXCIPSHYRWIFP 288
           LP + + F W     C P H  WI P
Sbjct: 426 LPISMFWFAWT----CYPHHIHWIVP 447


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 398  WHVLLVRCSHPCXNSPQRIRDG*QQXEHKIF 306
            W +LLV  +  C NS   +R+G  Q   +IF
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIF 1054


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 338 PEFSEENYXKDVSIV-RVTHAIHFGPNIQ 421
           P   + NY   ++ + ++TH  +FG NI+
Sbjct: 621 PTSMQPNYVAGITFMNKITHTTYFGTNIE 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,958
Number of Sequences: 5004
Number of extensions: 23600
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)