Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f12f
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)                29   1.6  
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)                     27   4.8  
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           27   8.3  
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
          Length = 275

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 337 MVNSKX-NIRYFXGLTATGRSXDNATVCXIVEFSMETGSS*KVVVVGENNTSALLE 173
           M+NS+  N   F G   TGR    AT   +V+  +E GS   ++V+ + +    +E
Sbjct: 215 MINSRGINALTFTGSLETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVE 270


>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 473

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 131 LVQIEVFLPILNQWFQQXAGIVLTNYHYLSTATCFHGEFY 250
           LV +E + P  N+W ++    +LT   Y STA    G+ Y
Sbjct: 112 LVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 160 LESMVPTXRWYCS-HQLPLPFNCYLFPWRILRXCIPSHYRWIFPSQ*ARXNILCSLCC*P 336
           L   +P   W  + + +P P +C L  WRIL    P HY+ I        + + SLC  P
Sbjct: 38  LRGSLPKKCWTVTQNDVPTPLDCGLSAWRILSG-FP-HYKLIEDDHIEIKDGIISLCLSP 95


>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 198 SPTTTTFQLLPVSMENSTXLHTVALSXDLPVAVSPXKYLMFXLLLTIPNSL 350
           SP+T+  Q++P +  +   L T + S +LPV       + F     IP  +
Sbjct: 143 SPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQSFRMTFTPPSMIPKPI 193


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 84  VQLQTAASTATXKVRTETIVPIESNGDL 1
           V ++T   TA  K   E   P+ESN DL
Sbjct: 342 VSMETEDGTANPKADVEMDAPVESNNDL 369


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 162 KMGRNTSIWTRXGX-SXIDXGLPRSLAVQLQTAASTATXKVRTETIVPIESNG 7
           K+G+ TS        + +  G+P S  ++++TA   ++ K+R     P+E NG
Sbjct: 579 KLGKFTSYRVSVSAFTSVGDGVP-SAEMKIKTAEDISSRKIRVRWDTPMEPNG 630


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 187 WYCSHQLPLPFNCYLFPWRILRXCIPSHYR 276
           W C +    PFNCY F ++     + S+ R
Sbjct: 747 WECDYLFEKPFNCYRFLFQATAFFLASNTR 776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,688,136
Number of Sequences: 59808
Number of extensions: 191742
Number of successful extensions: 350
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)