Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f12f
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    26   9.5  

>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 YSYPS*INGSNXALVLFSPTTTTFQLL 227
           YSYPS I   +  +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 186 LVLFSPTTTTFQLLPVSMENSTXLHTVALSXDLPVAVSPXKYLMFXLLLTIPNSLRRITT 365
           +V+F P  + F L+P+        H  A++  + V+VS   +L   LLL +    R  T 
Sbjct: 259 VVVFCPLLSLFYLVPMG------YHNQAITNGIFVSVSMHGFLSTVLLLLVHQPYRMATL 312

Query: 366 RM 371
           R+
Sbjct: 313 RI 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,427,730
Number of Sequences: 27780
Number of extensions: 137883
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)