Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f12f
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    23   1.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   9.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   9.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   9.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   9.9  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 412 WAEVDGMCYSYDAHILVVILLREFGMV 332
           W +  G C S   HI++V L  EFG++
Sbjct: 46  WFKAIGTCGS---HIIIVGLFYEFGLI 69


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 221 LKGSGSW*EQYQRXVGTIDSR 159
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 259 IPSHYRWIF 285
           IP+HY W++
Sbjct: 107 IPNHYLWLY 115


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 259 IPSHYRWIF 285
           IP+HY W++
Sbjct: 138 IPNHYLWLY 146


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 323 FAVNHPEFSEE 355
           +A+NHP + +E
Sbjct: 336 YAINHPRYRQE 346


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 329 VNHPEFSEENY 361
           +N  EF++ENY
Sbjct: 55  INESEFNDENY 65


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 37  RSHLXRSCARCRLQLHC*RSR 99
           RSH  +S  RC+L     RSR
Sbjct: 70  RSHRFKSLPRCQLSNKRDRSR 90


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 323 FAVNHPEFSEE 355
           +A+NHP + +E
Sbjct: 336 YAINHPRYRQE 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,685
Number of Sequences: 438
Number of extensions: 1985
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)