Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f12f
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30450.3 68414.m03722 cation-chloride cotransporter, putative...    30   0.55 
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative...    30   0.55 
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative...    30   0.55 
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    27   6.8  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    26   9.0  

>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 221 LKGSGSW*EQYQRXVGTIDSRWV 153
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 221 LKGSGSW*EQYQRXVGTIDSRWV 153
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 221 LKGSGSW*EQYQRXVGTIDSRWV 153
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
           PF03568: Peptidase family C50
          Length = 1773

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 169 MVPTXRWYCSHQLPLPFNCYLFPWRILRXCIPSHYRWIF 285
           ++ T  W C + L     CYL PW +L+  + S  + +F
Sbjct: 858 LLATDFWPCGNFLWDINRCYLSPWSVLQCYLESTLQVLF 896


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 158 ILNQWFQQXAGIVLTNYHYLSTATCFHGEF 247
           +LN  F       L  + Y+ST TCF+G F
Sbjct: 2   MLNTLFLPIFLFFLITFDYVSTQTCFNGYF 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,008,496
Number of Sequences: 28952
Number of extensions: 129156
Number of successful extensions: 253
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)