Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f11r
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37830.1 68417.m05352 cytochrome c oxidase-related contains w...    38   0.006
At4g16745.1 68417.m02529 exostosin family protein contains Pfam ...    33   0.13 
At4g20140.1 68417.m02947 leucine-rich repeat transmembrane prote...    31   0.39 
At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing pro...    27   6.4  
At1g23880.1 68414.m03012 NHL repeat-containing protein contains ...    27   6.4  
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont...    27   8.4  
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont...    27   8.4  
At3g58810.2 68416.m06555 zinc transporter, putative similar to z...    27   8.4  
At3g58810.1 68416.m06554 zinc transporter, putative similar to z...    27   8.4  
At1g78240.1 68414.m09118 dehydration-responsive protein-related ...    27   8.4  

>At4g37830.1 68417.m05352 cytochrome c oxidase-related contains weak
           similarity to cytochrome c oxidase polypeptide
           VIa-liver, mitochondrial precursor (EC 1.9.3.1)
           (Swiss-Prot:P10818) [Rattus norvegicus]
          Length = 102

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 389 WKRMSFFVAFPAIALGMLNAYLAHQEEHH-ERPPFVPYEYMRIRTKRFPWG-DGQKSLFH 216
           W+++++       AL +   Y+  +  HH E PP   Y +M IR K FPWG DG   + H
Sbjct: 44  WEKITYLGIASCTALAV---YVLSKGHHHGEDPP--AYPHMHIRNKEFPWGPDGLFEVKH 98

Query: 215 N 213
           N
Sbjct: 99  N 99


>At4g16745.1 68417.m02529 exostosin family protein contains Pfam
           PF03016: Exostosin family
          Length = 542

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 281 YEYMRIRTKRFPWGDGQKSLFHNPHVNAL 195
           YE M +  K + + DG K +FH PH+N +
Sbjct: 193 YELMELILKVYIYPDGDKPIFHEPHLNGI 221


>At4g20140.1 68417.m02947 leucine-rich repeat transmembrane protein
           kinase, putative Cf-2.2, Lycopersicon pimpinellifolium,
           PIR:T10515
          Length = 1249

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
 Frame = +1

Query: 460 KEIAALRRIEVIFLWELNRYE*NIK---GNC 543
           KEI+ALR++EV+FL+E NR+   I    GNC
Sbjct: 426 KEISALRKLEVLFLYE-NRFSGEIPQEIGNC 455


>At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing
           protein similar to SP|Q12149 Exosome complex exonuclease
           RRP6 (EC 3.1.13.-) (Ribosomal RNA processing protein 6)
           {Saccharomyces cerevisiae}
          Length = 880

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 241 PHGKRFVRMRMYS*GTNGGRSWCSSW 318
           PHGK+ V   +   G +G R +C  W
Sbjct: 813 PHGKQIVEYLLREHGEDGVRDFCQRW 838


>At1g23880.1 68414.m03012 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 545

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 320 HQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHNPHVN 201
           +   HH   P+  YE    +T    +G GQ+    N H N
Sbjct: 489 YHHRHHSTIPYTLYEQSSEKTNEIVFGPGQEQDQMNTHQN 528


>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +2

Query: 167 FSGHLHNRWEGHSHEGCGKGT--SVHHPMGNA 256
           FSG +HNR  G+  E  G      +HHP   +
Sbjct: 627 FSGRMHNRMSGNRRERGGSPVVRRLHHPQSES 658


>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +2

Query: 167 FSGHLHNRWEGHSHEGCGKGT--SVHHPMGNA 256
           FSG +HNR  G+  E  G      +HHP   +
Sbjct: 627 FSGRMHNRMSGNRRERGGSPVVRRLHHPQSES 658


>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
           transporter 4; ZnT4 [Mus musculus]
           gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
           [Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
           the cation diffusion facilitator (CDF) family, or cation
           efflux (CE) family, PMID:11500563
          Length = 393

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 173 GHLHNRWEGHSHE-GCGKGTSVHH 241
           GH H+   GHSH+ G G   + HH
Sbjct: 205 GHSHDNGHGHSHDHGHGIAATEHH 228


>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
           transporter 4; ZnT4 [Mus musculus]
           gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
           [Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
           the cation diffusion facilitator (CDF) family, or cation
           efflux (CE) family, PMID:11500563
          Length = 432

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 173 GHLHNRWEGHSHE-GCGKGTSVHH 241
           GH H+   GHSH+ G G   + HH
Sbjct: 244 GHSHDNGHGHSHDHGHGIAATEHH 267


>At1g78240.1 68414.m09118 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 684

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 396 HIMEKDVLLRCIPSYCSRNAKCXLSSPRGTP 304
           H++ K +L  CI +Y +  ++  L+  RG P
Sbjct: 290 HLLSKQILTMCIANYEASGSQVQLTLERGLP 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,958,814
Number of Sequences: 28952
Number of extensions: 211250
Number of successful extensions: 419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)