Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f11f
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047...    31   0.50 
10_02_0174 - 6202334-6204922                                           30   1.5  

>03_06_0120 +
           31804301-31804412,31804525-31804631,31804714-31804756,
           31806069-31806187
          Length = 126

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 168 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPW 314
           W+++++        L   N    H   H + PP   Y Y+ IR K FPW
Sbjct: 43  WEKITYAGIVTCTLLAAYNLSKGHP--HFDEPP--AYPYLHIRNKEFPW 87


>10_02_0174 - 6202334-6204922
          Length = 862

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 234 AHQEEHHERPPFVPYEYMRIRTKRFPW-GDGQ-KSLFHNPHVNALPSGYEDDH*ITII 401
           A  E  H+      Y  M  +     W GDG   S+ +NPH+ A   GY+ D  ++II
Sbjct: 346 ASSESKHKPKWLDDYSAMITQAVLTGWFGDGMANSVMYNPHLVARQFGYDQDFPVSII 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,728,881
Number of Sequences: 37544
Number of extensions: 268641
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)