Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f08r
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    31   0.15 
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    29   0.45 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    27   1.8  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.4  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   4.2  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   5.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   7.4  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.4  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   7.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.4  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   7.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.4  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   9.7  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.7  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   9.7  

>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 550 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 654
           I   +MR ELG   T RC   D QA    K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -3

Query: 251 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 72
           A E  +A    S  L  N+    + AAIT    K  +  + F +E G  V    E+I   
Sbjct: 74  AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130

Query: 71  LTDYAAE-VSRVLEYVAQLV 15
           + DY AE  S++LE   QL+
Sbjct: 131 VGDYVAENKSKILEQRYQLL 150


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -3

Query: 173 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYAAEVSRVLEYVAQLVINQI 3
           AITIGD  + L  +   +++GP V +F  + +P +LT ++  +S   +++ Q++   +
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS--LSNYQQHLYQVLTQNV 233


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +3

Query: 207 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 320
           EG     LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 144 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 22
           PP  S+   S  S   +P + P +P  L    QP + V+ P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 180 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 299
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +3

Query: 12  DDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDL--EVRFDIANSYCSSDV 185
           +DEL +VL +      V+ ++D + L E  D     A        ++   +  ++ ++  
Sbjct: 479 EDELSNVLVSIPSRTSVLERLDTNPLNESTDAVVGCAQLYYPSLGKILISLTRNWQTTVF 538

Query: 186 TDNDVVCEGDGSGSLSNDVLKGKSSGS 266
            D+D+   G    SLSN++   KS G+
Sbjct: 539 DDSDLATMGVNKESLSNEMDYSKSLGT 565


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
 Frame = -3

Query: 293  IFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREV 114
            ++S VL+  A     L+ V+A A    S  D   VS +  A+   D+ S L I L  + V
Sbjct: 952  LWSEVLQDSAYRRPLLDQVIATAVPESS--DPEAVSIVVKALMEVDLPSQL-IELLEKIV 1008

Query: 113  ----GPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQL 18
                  + N  L+ + ++LT   A+ SRV+EY+ +L
Sbjct: 1009 LQPSSFSENANLQNL-LFLTAIKADKSRVMEYIDKL 1043


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 86   KIPVYLTDYAAEVSRVLEYVAQLVINQI 3
            K+P +  DY  EV R+++  A L    I
Sbjct: 968  KVPTFYADYVNEVKRIIQRNANLEFEAI 995


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 210 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 314
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +3

Query: 198 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 365
           VV E D   +LS   LK  ++G      +AEN     S T    NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 498 ERISRSQQFTDFIEQV*DHDVKDA 569
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 131  LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 9
            +  R++GP V  F+ K+P  L +   ++  + + V +LV+N
Sbjct: 972  IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 314 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 150
           S +GEI   + V  +  + G  L NVV EA   A     D +I SD+  AA  + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 124 PKRLIWRLDLTSPI 165
           PK LIWR  LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 177 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 302
           SDV D +V+ E   +  +SN V + K  S  E   D A++  F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,180
Number of Sequences: 5004
Number of extensions: 44054
Number of successful extensions: 145
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)