Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f07r
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    28   0.091
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   4.5  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   4.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   6.0  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 603 PEYPTWAKLEVDQSQFRS*ISAPSLALWSRTFCPVPPLGRSHRP 734
           P Y TW+ ++   +     + +P++  WS T  P PP   S +P
Sbjct: 302 PTYSTWSTVQTPTT-----VMSPTINCWSLTSSPPPPYQISAQP 340


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = -2

Query: 672 TVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVS 535
           T+ +  +++   +  +LP+  ++A  + +N   T++ D+D  L V+
Sbjct: 13  TMARTPLKSSFSISSILPETALEAPKSPENHPETELSDSDCDLDVT 58


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 302 TVGIKYKFVYRLFY 343
           TVG+ Y F  R+FY
Sbjct: 30  TVGVVYSFKRRIFY 43


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = -1

Query: 739 EAGRWLRPNGGTGQNVLD--QSASDGAE 662
           +AG W R   G G N  D  Q  S G +
Sbjct: 44  DAGEWFRLVAGEGDNCRDVIQCTSSGLQ 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,065
Number of Sequences: 336
Number of extensions: 3545
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)