Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f07r
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      58   1e-08
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      50   2e-06
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      47   2e-05
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.99 
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)                29   3.0  
SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)             29   4.0  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 34/105 (32%), Positives = 55/105 (52%)
 Frame = -2

Query: 696 MFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKA 517
           M +T V V++PKF++  +++L  +L  LG+  IF+ + + L+ I    + LYVS A+ KA
Sbjct: 229 MINTTVEVSIPKFRLSQKLELRSLLQDLGVSDIFDSRKADLSGI-SAAKGLYVSSAIHKA 287

Query: 516 FIEVNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAIH 382
            IEVN           +V++             F A+ PFL +IH
Sbjct: 288 HIEVNERGTVAAATTGVVMA----KRSLDMNEVFYADHPFLFSIH 328


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 33/108 (30%), Positives = 52/108 (48%)
 Frame = -2

Query: 681 VRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVN 502
           V V +PKFK+ +E  L + L +LG++ +F++  +  T I    E L+VS  + KAF+EVN
Sbjct: 230 VEVYIPKFKMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVN 289

Query: 501 XXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAIHVREIPCFL 358
                     A ++           +  F A+ PFL  I   +  C L
Sbjct: 290 EEGTEAAAATAAIMMMRCAIMREPLV--FRADHPFLFLIQHCKSKCVL 335


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 33/100 (33%), Positives = 46/100 (46%)
 Frame = -2

Query: 684 KVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEV 505
           +V VT+PKF +  E  L + L  +G   +F+   + L+ I  +  PL VS+ V KAF+EV
Sbjct: 266 EVEVTLPKFTLTQEFSLGETLKGMGASDLFSPGKADLSGI--SAAPLVVSEVVHKAFVEV 323

Query: 504 NXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAI 385
           N           +    GI          F AN PFL  I
Sbjct: 324 NEEGTIAAAATGV----GIMLMSMPMNPVFYANHPFLFLI 359


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 554  TSRCTYPRLCKKPSLKSTRKAPKQPPPQPWS*VAASRLQEDSSFD 420
            TS+   P   K+PSLK+ +K PK     PWS VA + + + S  +
Sbjct: 980  TSKAKKPSKRKRPSLKTVQKRPK---TVPWSCVACTFVNDPSMIE 1021


>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
          Length = 901

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 305 LSNHCHCINLYLK*HGQSKIKKYN 234
           LS HCH  NLY+K   +S I  YN
Sbjct: 333 LSRHCHKANLYIKPKKRSAIMWYN 356


>SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 696 MFSTKVRV-TVPKFKIETEIDLLQVLP 619
           ++S  VR+ TVPK K E EID L++ P
Sbjct: 87  LYSPSVRIYTVPKIKHENEIDSLKLFP 113


>SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)
          Length = 381

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 576 LTKILDNDEPLYVSKAVQKAFIEVN 502
           +TK LD DEPL +  + +KA +E N
Sbjct: 80  ITKNLDKDEPLRIEISARKAVLEAN 104


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/65 (30%), Positives = 23/65 (35%)
 Frame = -3

Query: 701  TKCSRPKCE*RCRNSRSKLRLIYFKFCPSWVFRRSSTARIPV*PRSWITTSRCTYPRLCK 522
            T C  P+C  RC +    L L   K CPSW    S     P   R   T      P  C 
Sbjct: 1618 TSCE-PECPVRCCSGSQTLDLGVSKTCPSWCSVSSCKPDCPA--RCCTTEPLSACPATCS 1674

Query: 521  KPSLK 507
              S +
Sbjct: 1675 PDSCR 1679


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,295,866
Number of Sequences: 59808
Number of extensions: 410053
Number of successful extensions: 1156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)