Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f07r
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25240.1 68415.m03020 serpin, putative / serine protease inhi...    48   9e-06
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi...    37   0.016
At3g18150.1 68416.m02308 hypothetical protein                          28   7.6  
At5g62050.1 68418.m07788 OXA1 protein (OXA1) identical to AtOXA1...    27   10.0 
At3g44790.1 68416.m04823 meprin and TRAF homology domain-contain...    27   10.0 
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    27   10.0 

>At2g25240.1 68415.m03020 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 324

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
 Frame = -2

Query: 669 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILD---NDEPLYVSKAVQKAFIEVNX 499
           +PKFK   E +  +VL  +G+ + FN    GLT+++D   N + LYVS  + KA IEV+ 
Sbjct: 212 IPKFKFSFEFNASEVLKDMGLTSPFN-NGGGLTEMVDSPSNGDDLYVSSILHKACIEVD- 269

Query: 498 XXXXXXXXXAMVVSGGITSAGGQFIRY--FVANRPFLAAI 385
                    A  VS G+ S    F R   FVA+RPFL  +
Sbjct: 270 ----EEGTEAAAVSVGVVSC-TSFRRNPDFVADRPFLFTV 304


>At1g47710.1 68414.m05302 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 391

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
 Frame = -2

Query: 684 KVR-VTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDE---PLYVSKAVQKA 517
           KVR   +PKFK     D   VL  LG+ + F+ +  GLT+++++ E    L VS    KA
Sbjct: 271 KVREFKIPKFKFSFGFDASNVLKGLGLTSPFSGE-EGLTEMVESPEMGKNLCVSNIFHKA 329

Query: 516 FIEVNXXXXXXXXXXAMVVSGGITSAGGQFIRY----FVANRPFLAAI 385
            IEVN          A   S G+    G  +      FVA+ PFL  +
Sbjct: 330 CIEVN-----EEGTEAAAASAGVIKLRGLLMEEDEIDFVADHPFLLVV 372


>At3g18150.1 68416.m02308 hypothetical protein
          Length = 272

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +3

Query: 33  FCNPGCL-----YLSSFIQSTLKFTRTYNNAIILIFEHYILTKAL 152
           F N  CL     ++ SF++  LK T+  +  ++L+ +HY+  K +
Sbjct: 207 FWNKSCLDVESEHVVSFVELMLKNTKALDKMVVLLEDHYVRFKEM 251


>At5g62050.1 68418.m07788 OXA1 protein (OXA1) identical to AtOXA1
           [Arabidopsis thaliana] GI:6624207
          Length = 429

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 563 WITTSRCT--YPRLCKKPSLKSTRKAPKQPPPQP 468
           WIT++  +  Y  + K+P +K   + P  PPP P
Sbjct: 329 WITSNLFSLMYGLVIKRPQVKKMLRIPDLPPPPP 362


>At3g44790.1 68416.m04823 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 324

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 657 KIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAV 526
           KI  E+D+LQV+ KL +          L +I  ND+ + V +++
Sbjct: 120 KIVVEVDVLQVIGKLDVSEGSQEVTQPLKRIRLNDDGVSVKQSI 163


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
 Frame = -2

Query: 432 QFIRYFVANRPFLAAIHVREIP------CFLAHF----RG*NNRYTNLYFIPTVKPLSLY 283
           + +RY + N   L  + +R +       CFL       RG N+ Y+  + + T  PLSL 
Sbjct: 538 KIVRYLLQNSAILKKLTIRLVKRSWKAECFLEDLCCIQRGSNSSYSRKFLLITFLPLSLA 597

Query: 282 *SVFKITW 259
              F + W
Sbjct: 598 CLAFLLQW 605


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,045
Number of Sequences: 28952
Number of extensions: 294253
Number of successful extensions: 861
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)