Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f07f
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 32 0.39
03_05_0294 + 22855503-22855946,22856346-22856399 31 0.89
01_06_0887 + 32733300-32734565 31 0.89
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 29 2.7
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 29 3.6
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 28 4.8
01_01_1152 + 9170628-9171899 28 4.8
11_02_0012 - 7346282-7347136,7347234-7347593 28 6.3
04_04_0619 + 26652923-26653267,26653440-26654273 28 6.3
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 28 6.3
02_04_0632 + 24614659-24615528,24615636-24616133 28 6.3
07_03_1280 + 25434933-25436153 27 8.3
07_01_0731 - 5566878-5567513 27 8.3
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 8.3
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 31.9 bits (69), Expect = 0.39
Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Frame = +2
Query: 203 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP--DD--DTIRXXXXXXXXXX 370
+ KN+V SP S LAL+ G +ELL LG DD +++R
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 371 XXIKGVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFD-NGAAAAGLINKWVE 547
G + A ++ E EL P + A + A NF + INKWV
Sbjct: 87 SASGGPRVSDACGVWHDE-TLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVS 145
Query: 548 IKQMNAL 568
K N L
Sbjct: 146 -KATNKL 151
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 218 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDT 334
NV SPLS L+L+ G ++L++ LG+P T
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGT 83
>01_06_0887 + 32733300-32734565
Length = 421
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 389 TFNVANKIYIKEGDYELDPKLKK--DAVEVFDADFEKVNFDNGAAAAGLINKWVEIKQMN 562
TFN+ N+I ++ EL P+ K + ++ A F +G AGLIN I
Sbjct: 123 TFNLPNRIQLEREALELAPEEKPLLHRLVIYTATLSSDPFMDGCVVAGLINDQAPIPGYR 182
Query: 563 ALKIS 577
KI+
Sbjct: 183 RQKIA 187
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -2
Query: 562 VHLFYFNPFVY*AGGCGSVIEVNFFKICIEYLDSVLLKFWVELI----VTLLDVYFV 404
V+ +PF+ A G + ++ F C +L +LLKFWV+L+ VT VYF+
Sbjct: 729 VNFLLISPFLVTANG---MFVIDLF--CTWFLGLLLLKFWVKLVHWTTVTPFLVYFI 780
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 215 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 322
+NV SPLS L+L+ G ++L ++LG P
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGP 70
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -3
Query: 384 PFIDF--NFDDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNG 232
PF+ F +DD +++R V+S I +SCAGSV+ + ++ +K D G
Sbjct: 84 PFLYFMVQYDDILFHEKRRVTSVTIDFTFGLNSCAGSVI-RDLHIAKQEEDIG 135
>01_01_1152 + 9170628-9171899
Length = 423
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 215 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 322
+N + SPLS LAL+ G ELL LG P
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSP 94
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 206 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTI 337
+ +NVV SP+S LAL+ G +EL+ LG D +
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDL 71
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 27.9 bits (59), Expect = 6.3
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Frame = +2
Query: 203 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTIRXXXXXXXXXXXXIK 382
+ ++ N + SPL LAL+ GT +LL LG +
Sbjct: 16 ITEQSNFMFSPLGLRAGLALLATGTDGETLRQLLAFLGSQHIHQLNAASAGLLAEMRAWP 75
Query: 383 GVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFDNGA-AAAGLINKWV 544
++F A I++ + L P+ + A A V+F N A AAA +N+++
Sbjct: 76 QLSF--AAGIFV-DRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFI 127
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -3
Query: 306 VNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVIAEDKAFESILRTGF 127
V+ ++ A P V N S NG +SSS N + D + ++ T +
Sbjct: 7 VDCNNTANGFKPFVGNVEVISLSNGQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPY 66
Query: 126 FISNSVNSITV 94
+S+S N TV
Sbjct: 67 RLSDSANKFTV 77
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -3
Query: 315 PRLVNSSSCAGSVVPKVINASKYSA----DNGDD 226
P L+ +G+ PK+ NAS Y+A DNGDD
Sbjct: 75 PSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108
>07_03_1280 + 25434933-25436153
Length = 406
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Frame = -3
Query: 234 GDDTTFFFLSSSLQNFAENLVIAEDKAFESILRTG-------FFISNSVNSITVKIN*KF 76
GDD T +FLS S A N+ + + + S + G +F+SNS + +++ +
Sbjct: 216 GDDETVYFLSKSGDVMATNMQRSASRQYSSAVTCGDGGEAVAYFLSNSGAVVACELSRRA 275
Query: 75 YLDL 64
+ +L
Sbjct: 276 FAEL 279
>07_01_0731 - 5566878-5567513
Length = 211
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 437 LDPKLKKDAVEVFDADFEKVNFDNG 511
LD D VE+ DADFE +FD+G
Sbjct: 95 LDYVYDDDDVELVDADFEDGSFDDG 119
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 378 IDFNFDDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNGDDT 223
+D + D E+D+ + + R VN + V P + S S NGD T
Sbjct: 639 VDSHMDPDYESDDEFGNKKAVERSVNWARSDPFVSPVKVKYSNSSQKNGDAT 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,686
Number of Sequences: 37544
Number of extensions: 246551
Number of successful extensions: 578
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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