Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f07f
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   27   8.5  
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   8.5  

>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 428 DYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGL 529
           DY++D KL  DA +  D +FE+++ +N    A L
Sbjct: 373 DYQVDYKLLLDAKKKLDTEFEELSKNNSEREAVL 406


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 210 KRRMLYHRHCQQNTCWR 260
           K RM + + CQ+N CWR
Sbjct: 561 KARMFWAQCCQKNACWR 577


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 369 NFDDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNGDDT 223
           N DD    D+R  SS+G    V+  +     +    N +KY   N DDT
Sbjct: 184 NIDDGNNVDDR--SSNGNNNNVDQDNNDDETITTTTNKNKYDGGNNDDT 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,942
Number of Sequences: 59808
Number of extensions: 290487
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)