Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f07f
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    41   5e-04
At2g46915.1 68415.m05859 expressed protein  and genscan                32   0.32 
At5g16690.1 68418.m01954 origin recognition complex subunit 3-re...    30   1.3  
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ...    28   4.0  
At1g51170.1 68414.m05754 protein kinase family protein                 28   4.0  
At4g29670.2 68417.m04227 thioredoxin family protein contains Pfa...    27   9.2  
At4g29670.1 68417.m04226 thioredoxin family protein contains Pfa...    27   9.2  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
 Frame = +2

Query: 218 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTIRXXXXXXXXXXXXIKGVTFN 397
           NVV SP+S   LL+LI  G+     EE+L+ L  P  D +                +  +
Sbjct: 31  NVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDHLNAVLAKIADGGTERSDLCLS 90

Query: 398 VANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNF-DNGAAAAGLINKWVEIKQMNALK 571
            A+ ++I +  Y L P  K+     + A   +V+F          +N W ++     +K
Sbjct: 91  TAHGVWIDKSSY-LKPSFKELLENSYKASCSQVDFATKPVEVIDEVNIWADVHTNGLIK 148


>At2g46915.1 68415.m05859 expressed protein  and genscan
          Length = 708

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 26/91 (28%), Positives = 41/91 (45%)
 Frame = -3

Query: 363 DDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFA 184
           DD +E +E I SS  +PR    +     +V  ++     S D GD   F  LSS L    
Sbjct: 86  DDDSEEEEGI-SSIHVPREKYINVSKSDLVNGIVTKLLDSQDGGDADIFLLLSSCL---- 140

Query: 183 ENLVIAEDKAFESILRTGFFISNSVNSITVK 91
           ++++ AE K     +R  F  + S+    +K
Sbjct: 141 DSILHAEHKRILEQMRADFVATQSLEEEELK 171


>At5g16690.1 68418.m01954 origin recognition complex subunit
           3-related / ORC3-related low similarity to SP|Q9UBD5
           Origin recognition complex subunit 3 (Origin recognition
           complex subunit Latheo) {Homo sapiens}
          Length = 556

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 372 FNFDDTAENDERIVS---SSGIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSS 202
           FN  DTAEND R  S   +  +  +V S     S  PK+   S+  +   +D  FF  S+
Sbjct: 19  FNSSDTAENDIRASSGNHNGKLTGIVKSKRRIESPSPKIAKRSEVESVEEEDGQFF--ST 76

Query: 201 SLQNFAENLVIAEDKAFESILR 136
                 E +    +K  E +LR
Sbjct: 77  LRFKVFETVWSKIEKTIEDVLR 98


>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 812

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -3

Query: 363 DDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFA 184
           +D+ +N      SS  P+   SS        KV++  +  ADN  DT     SS      
Sbjct: 655 EDSKDNGRSAAQSSSQPKESQSSKKNKGKAVKVVDPKETLADNFMDTVRRLQSSQNPQEE 714

Query: 183 ENLVIAEDK 157
           E   I++DK
Sbjct: 715 EEEAISKDK 723


>At1g51170.1 68414.m05754 protein kinase family protein
          Length = 404

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 411 YTSRRVTMSSTQNLRRTLSRYSMQILKKLTSITEPQP 521
           +  + V  SS  +LRR  +R+ +QIL++L+  T P P
Sbjct: 52  FALKLVDKSSASSLRR--ARWEIQILRRLSDDTNPNP 86


>At4g29670.2 68417.m04227 thioredoxin family protein contains Pfam
           profile PF00085: Thioredoxin
          Length = 236

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +2

Query: 437 LDPKLKKDAVEVFDADFEKVNFDNGAAAAGLIN 535
           L PKL K AVE  D  F KVNFD        +N
Sbjct: 141 LFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLN 173


>At4g29670.1 68417.m04226 thioredoxin family protein contains Pfam
           profile PF00085: Thioredoxin
          Length = 235

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +2

Query: 437 LDPKLKKDAVEVFDADFEKVNFDNGAAAAGLIN 535
           L PKL K AVE  D  F KVNFD        +N
Sbjct: 141 LFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLN 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,270,777
Number of Sequences: 28952
Number of extensions: 214097
Number of successful extensions: 553
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)