Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f06r
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    26   0.37 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    26   0.37 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    26   0.37 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    26   0.37 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    25   0.64 
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    25   0.64 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.64 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 628 VTVAFICSCVHERVGMVYGVPHKGYSVHRVHGLHVRPVHGHGAV 497
           V+V FI       V   +    +G+S H++  L ++PV G  A+
Sbjct: 312 VSVLFILLVKEGEVAFFFTQFSEGFSTHQIQVLEIKPVLGGTAL 355


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 628 VTVAFICSCVHERVGMVYGVPHKGYSVHRVHGLHVRPVHGHGAV 497
           V+V FI       V   +    +G+S H++  L ++PV G  A+
Sbjct: 312 VSVLFILLVKEGEVAFFFTQFSEGFSTHQIQVLEIKPVLGGTAL 355


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 628 VTVAFICSCVHERVGMVYGVPHKGYSVHRVHGLHVRPVHGHGAV 497
           V+V FI       V   +    +G+S H++  L ++PV G  A+
Sbjct: 312 VSVLFILLVKEGEVAFFFTQFSEGFSTHQIQVLEIKPVLGGTAL 355


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 628 VTVAFICSCVHERVGMVYGVPHKGYSVHRVHGLHVRPVHGHGAV 497
           V+V FI       V   +    +G+S H++  L ++PV G  A+
Sbjct: 312 VSVLFILLVKEGEVAFFFTQFSEGFSTHQIQVLEIKPVLGGTAL 355


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 38  FYLKINRLKLHCYGFYKSLSCLLCV 112
           +YL+ + L  H +G+Y  L+ L C+
Sbjct: 197 YYLQADMLLWHTFGYYHILAMLNCL 221


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 38  FYLKINRLKLHCYGFYKSLSCLLCV 112
           +YL+ + L  H +G+Y  L+ L C+
Sbjct: 197 YYLQADMLLWHTFGYYHILAMLNCL 221


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 568 PHKGYSVHRVHGLHVRPVHGH 506
           PH  +++H  H  HV P   H
Sbjct: 43  PHLNHAMHPYHANHVNPTANH 63


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 303 LSARGSRYSSRMLWF 259
           +S  GSRY  R  WF
Sbjct: 71  MSKSGSRYGRRSNWF 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,021
Number of Sequences: 336
Number of extensions: 3232
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)