Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f06r
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...   124   2e-29
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    31   0.23 
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    29   0.69 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    29   0.91 
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    28   1.2  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    28   1.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    28   1.6  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   2.1  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    26   4.9  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    26   4.9  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    26   4.9  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   6.4  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    26   6.4  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   6.4  

>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score =  124 bits (298), Expect = 2e-29
 Identities = 77/214 (35%), Positives = 106/214 (49%), Gaps = 5/214 (2%)
 Frame = -1

Query: 738 GMQEPASVFASLLNLXANAYMYSKLRTEFSIKSRPMVLLWHLFALVCMNAWVWSMVFHTR 559
           G+QE  SVF S+LN   +   Y  +R        P   L   +A+V MNAWVWS VFH R
Sbjct: 103 GIQELFSVFFSMLNFMIHYNGYHIMRRCIP-DEHPAKRLCLSWAIVGMNAWVWSSVFHIR 161

Query: 558 DTPFTEFMDYTCALSMVM-GLYVAAVVRILHSQK---KIVATLLTGSLLY-FATHVRLLA 394
           DTP TE +DY  A + V+ G Y   ++ +   Q    K++  ++    +  F  HV  L+
Sbjct: 162 DTPITEKLDYFSAGAFVLFGSYCTLILMLRLDQLPGGKLLCWIIGVIFIAAFIAHVSYLS 221

Query: 393 TGVVDYDYNMTVNVIFGAVGSFIWLVYAGYLSARGSRYSSRMLWFVTCSAVVLPLELLDF 214
               DY YNM  NV  G V + +W  Y+      G  ++    + VT   +   LEL DF
Sbjct: 222 FYSFDYGYNMKANVAVGLVQNILWYYYSWSNRNSGLYWTRWPAYIVTSLMLATSLELFDF 281

Query: 213 PPVRRAWDAHAVWHLSTAPLPLLFYQFVIEDLRY 112
            P+    DAHA+WHLST P+    Y FV+    Y
Sbjct: 282 SPIANLIDAHALWHLSTVPITHYLYGFVVRKCSY 315


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 360 VNVIFGAVGSFIWLVYAGYLSARGSRYSSRMLWFVTCSAVVL 235
           V   FG++ +F+ L    Y    G  Y  R++ F+T S ++L
Sbjct: 188 VRAAFGSLAAFLGLFSTAYYGTMGDIYGRRLVLFITVSFLLL 229


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 327 IWLVYAGYLSARGSRYSSRMLWFVTCSAVV 238
           ++LV A  L  +G R S R LW+ TC AV+
Sbjct: 298 VYLVSARPLEEQGERESQR-LWYKTCQAVI 326


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 551 GVSLVWNTIDHTHAFMHTRANKCHSNTIGLD-LIENSVLNLEYMYAF 688
           G S++W+T      + H R   C  + +G+  LI  S++++EY +AF
Sbjct: 258 GCSVIWHTFSSLSNYKHMRCAAC-MDYVGISALIAASIISVEY-HAF 302


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 351 IFGAVGSFIWLVYAGYLSARGSRYSSRMLW 262
           IF A+  FIW+ Y GY   +  R SS+  W
Sbjct: 419 IFIALSDFIWICYRGYTYLK-ERDSSKSYW 447


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -1

Query: 648 IKSRPMVLLWHLFALVCMNAWVWSMVFHTRDTPFTEFMDYTCALSMVMGLYVA 490
           + S+P+ ++     +   N  V+  + H R TP+  F+ + C  SM+    +A
Sbjct: 88  LSSQPLCIVGVTGPITVFNYTVYD-IMHDRGTPYFPFLCWICLWSMIFHFIIA 139


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 531 YTCALSMVMGLYVAAVVRILHSQKKIVATLLTGSLLYFATHVRL 400
           + C +  +    + A V+ L+   KI+ T+   SL+YF++ +++
Sbjct: 543 FPCLMGKLEQRVIDAYVKCLNCSNKIIHTVCHNSLIYFSSGLKM 586


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = -1

Query: 495 VAAVVRILHSQKKIVATLLTGSLLYFATHVRLLATGVVDYDYNMTVNVIFGAVGS-FIWL 319
           VAA++        +V + +TG ++Y   HVR + T   + + NMT         S  IW 
Sbjct: 584 VAALLFTSGIWSSLVNSAVTGWIMY---HVRDVCTS--NAENNMTCRSPKTQFNSHLIWG 638

Query: 318 VYAGYLSARGSRYSSRMLWFVTCSAVVLPLELLDFPPVRRAW 193
           +   ++ +   RYS  M +F+  + V + + LL     + +W
Sbjct: 639 LVGNHIFSSDGRYSFVMWFFLVGAVVSVVVYLLQISFPKSSW 680


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 654 FSIKSRPMVLLWHLFALVCMNAWVWSMVFHTRDTPFTEFMDY-TCALSMVMGLYVAAV 484
           F+I+   M+++W L+ ++C    +      + D    + + Y TC +S V+ L V++V
Sbjct: 228 FNIRREMMIIIWLLWLIICC---ILFGCVKSGDLNLNKALIYSTCTISAVLLLIVSSV 282


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 654 FSIKSRPMVLLWHLFALVCMNAWVWSMVFHTRDTPFTE-FMDYTCALSMVMGLYVAAV 484
           F+I+   M+++W L+ ++C   +V+     + D    +  +  TC +S V+ L V++V
Sbjct: 157 FNIRREMMIIIWILWLIICCILFVY---IKSGDLILNKALICSTCTISAVLLLIVSSV 211


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 654 FSIKSRPMVLLWHLFALVCMNAWVWSMVFHTRDTPFTEFMDY-TCALSMVMGLYVAAV 484
           F+I+   M+++W L+ ++C    +      + D    + + Y TC +S V+ L V++V
Sbjct: 195 FNIRREMMIIIWLLWLIICC---ILFGCVKSGDLNLNKALIYSTCTISAVLLLIVSSV 249


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -1

Query: 516 SMVMGLYVAAVVRILHSQKKIVATLLTGSLLYFATHVRLLATGVVDYDYNMTVNVIFGAV 337
           S V  LY    + IL +   +   +L+ S+L  A H       V  + Y +++  +FG  
Sbjct: 341 SRVPMLYAIGFL-ILFTIGGLTGVILSNSVLDIAFHDTYFV--VAHFHYVLSMGALFGLC 397

Query: 336 GSFIW 322
           G++ W
Sbjct: 398 GAYYW 402


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 627 LLWHLFALVCMNAWVWSMVFHTRD 556
           L +HLFAL  +N ++W  +  ++D
Sbjct: 175 LSYHLFALWVINLYIWIKLIDSKD 198


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +1

Query: 16  LRSGLSSVLFKNQQTKVTLLRFLQKFVLSALRITEIFNHELVEEQGQ--RRGAEVPHGVR 189
           L  G   V FK++ + V  +  +  FVL   ++    +H+ V+   +  ++ +  P G +
Sbjct: 663 LSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTK 722

Query: 190 V-----PRAADRREVQQL 228
           +     P  A +++VQ L
Sbjct: 723 ILIKNLPFEATKKDVQSL 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,645
Number of Sequences: 5004
Number of extensions: 51468
Number of successful extensions: 169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)