Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f06r
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0003 - 7298555-7298841,7299199-7299386,7299484-7299683,729... 126 1e-29
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 72 6e-13
04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992... 31 1.3
12_02_1276 - 27487424-27488050,27488258-27489172 29 3.9
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575... 29 5.1
03_02_0914 - 12351553-12351679,12351966-12352102,12352558-123526... 28 6.7
07_03_1002 - 23229298-23231471,23235866-23237777 28 8.9
07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591... 28 8.9
01_06_1739 - 39573754-39574194,39574485-39574664 28 8.9
>05_03_0003 -
7298555-7298841,7299199-7299386,7299484-7299683,
7299774-7300038,7302403-7302512
Length = 349
Score = 126 bits (305), Expect = 1e-29
Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Frame = -1
Query: 732 QEPASVFASLLNLXAN--AYMYSKLRTEFSIKSRPMVL--------LWHLFALVCMNAWV 583
QEP S S +NL + ++ L + + RP LWH++A++ MNAW
Sbjct: 125 QEPLSAALSAVNLLMHFTGWLSFFLLVNYKLPVRPQTKRTYYEYTGLWHIYAILSMNAWF 184
Query: 582 WSMVFHTRDTPFTEFMDYTCALSMVMGLYVAAVVRILHSQKKIVATLLTGSLLYF-ATHV 406
WS +FHTRD TE +DY+ A++++ + +++R + + + + +L F TH+
Sbjct: 185 WSSIFHTRDIDLTEKLDYSSAVALLGYSLILSLLRTFNVKDEATRVMFAAPILAFVTTHI 244
Query: 405 RLLATGVVDYDYNMTVNVIFGAVGSFIWLVYAGYLSARGSRYSSRMLWFVTC-SAVVLPL 229
L +DY +NM V V+ V W ++AG ++ SR+ LW V A+ + L
Sbjct: 245 LYLNFYELDYGWNMKVCVVMAVVQLLAWAIWAG-ITQHPSRFK---LWVVVFGGALAMLL 300
Query: 228 ELLDFPPVRRAWDAHAVWHLSTAPLPLLFYQFVIEDLRYTQS 103
E+ DFPP + DAH++WH ST PL L++ F+ +D + S
Sbjct: 301 EVYDFPPYKGYADAHSLWHASTIPLTYLWWSFIKDDAEFRTS 342
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 71.7 bits (168), Expect = 6e-13
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 11/215 (5%)
Frame = -1
Query: 732 QEPASVFASLLNLXA--NAYMYSKLRTEFSIKSRPMVL--------LWHLFALVCMNAWV 583
QEP S S L+L N ++ L + + RP LWH++ L+ MNAW
Sbjct: 123 QEPISAALSALSLLVQFNGWLSFFLLLSYKLPLRPETQMTYYEYTGLWHIYGLLAMNAWF 182
Query: 582 WSMVFHTRDTPFTEFMDYTCALSMVMGLYVAAVVRILHSQKKIVATLLTGSLLYF-ATHV 406
W ++H+ DT +TE + Y+ + + + A++R L+ + + ++ +L F TH+
Sbjct: 183 WRAIYHSCDTVWTEKLYYSSFAAFIGYSLILAILRTLNLKDEASRVMVAAPILAFTTTHI 242
Query: 405 RLLATGVVDYDYNMTVNVIFGAVGSFIWLVYAGYLSARGSRYSSRMLWFVTCSAVVLPLE 226
L +D N V +W V+A ++ S + ++L+ + + + LE
Sbjct: 243 LYLNFYELDKGLNTKVCTAASLAQFLLWAVWA-VMTKHPSCF--KILFVIIGNVFSIVLE 299
Query: 225 LLDFPPVRRAWDAHAVWHLSTAPLPLLFYQFVIED 121
D PP D + PL L+++F ED
Sbjct: 300 TYDIPPRWGYVDGRVFCVAISIPLTYLWWKFAKED 334
>04_03_0178 +
12298502-12298878,12298896-12298998,12299211-12299271,
12299423-12299486,12299825-12299996,12300765-12300863
Length = 291
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Frame = -2
Query: 578 LWCSTQGILRSQSS---------WTTRAPCPWSW 504
LWCST LRS ++ WT+R CPW W
Sbjct: 243 LWCSTPNKLRSHNTEFSLCVLQPWTSRG-CPWGW 275
>12_02_1276 - 27487424-27488050,27488258-27489172
Length = 513
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = -1
Query: 510 VMGLYVAAVVRILHSQKKIVATLLTGSLLYFATHVRLLATGVVDYDYNMTVNVIFGAVGS 331
+M L V V ++ + K++ +L FAT +L+A G+V YD+ +++F G
Sbjct: 81 LMHLRVGQVPVVVVTSKELARDILKTHDANFATRPKLVAGGIVAYDW---TDILFSPSGD 137
Query: 330 F 328
+
Sbjct: 138 Y 138
>10_02_0139 +
5753426-5754841,5755566-5755655,5756011-5756379,
5756796-5756982,5757567-5757631
Length = 708
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 193 PRAADRREVQQLQRQHDRGARHEPQHAR-RVAGASRAQVPRVHQPDKRTHRA 345
P ++ R + H+R R EP H R G S + RV QP H A
Sbjct: 172 PSSSSRETLNAFGGMHNREQRREPSHQHPRGFGRSLEKEQRVVQPSAGGHEA 223
>03_02_0914 -
12351553-12351679,12351966-12352102,12352558-12352653,
12353056-12353989,12354985-12355175
Length = 494
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -1
Query: 453 VATLLTGSLLYFATHVRLLATGVVDYDYNMTVNVIFGAVGSFIWLVYAGYLSARGSRYSS 274
+A L+ G LL+F VR ++ Y++T + G W ++ G+R +
Sbjct: 216 LAYLVLG-LLWFLQFVRCWKD-ILQLHYHITAVIALGMCEMAFWYFEYANFNSTGNRPMA 273
Query: 273 RMLWFVTCSAV 241
LW VT +AV
Sbjct: 274 ITLWAVTFTAV 284
>07_03_1002 - 23229298-23231471,23235866-23237777
Length = 1361
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -1
Query: 315 YAGYLSARGSRYSSRML--WFVTCSAVVLPLELLDFPPVRRAW 193
+ G+ SA G +S + W PL + PP+ RAW
Sbjct: 935 HVGFASATGILFSRHFVLGWSFAVDGPAPPLNISSLPPLPRAW 977
>07_01_0769 +
5908942-5908946,5909085-5909666,5910370-5910429,
5910635-5910674,5910767-5910860,5911582-5911952
Length = 383
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 142 EEQGQRRGAEVPHGVRVPRAADRREVQQLQRQHDRGARHEPQHARRVAGASRAQVPRVHQ 321
EE+G++R V HG + D+ Q ++ E H R G+ R HQ
Sbjct: 63 EERGEKR-RRVGHGQQRSHQRDQERSHQHDQERSVERDQERSHQRDQEGSVERDQERSHQ 121
Query: 322 PDKRTHRA 345
D+ HR+
Sbjct: 122 RDR--HRS 127
>01_06_1739 - 39573754-39574194,39574485-39574664
Length = 206
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 139 VEEQGQRRGAEVPHGVRVPRAADRREVQQLQRQHDRGARHEPQHARRVAGASRAQVPRVH 318
VEE+ +++ H PRAA E QQ ++ R + ARR A+ + +
Sbjct: 29 VEEEEEKKKQR--HAAAPPRAAAPEEQQQAEKTPRRTSTKRGDSARRAISANLTVLAAIS 86
Query: 319 QPDKR 333
P+ +
Sbjct: 87 NPNTK 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,077,909
Number of Sequences: 37544
Number of extensions: 363677
Number of successful extensions: 1001
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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