Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f06r
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            31   1.3  
SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)                 29   3.0  
SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95)                    29   3.0  
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)                  29   3.0  
SB_36032| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=1.9)             29   3.0  
SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)                   29   5.2  
SB_22345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_14730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_40806| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 182 PCGTSAPRRCPCSSTNS*LKISVIRRADKTNFCKNRNNVT 63
           P GTSAP +CP  S    L+    +   + +FC N+N+++
Sbjct: 273 PKGTSAPVKCPSGSYQDELQKDSCKVCPEGHFCDNKNDLS 312


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
 Frame = +1

Query: 73  LRFLQKFVLSALRITEIFNHELVEEQGQRRGAEVPHGVRVPRAADRREVQQLQRQHDRGA 252
           +R   K V   +RIT    H+    + +    +V   VR+      REVQ    Q  RG 
Sbjct: 469 VRITHKQVTREVRIT----HKQATREVRITHEQVTREVRITHEQVTREVQITYEQVTRGV 524

Query: 253 RHEPQHARRVAGASRAQ----VPRVHQPDKRTHR 342
           R    HA R    +  Q    +P  H+P  R  R
Sbjct: 525 RITHDHATREVWITYEQATREIPLAHEPATREER 558


>SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 267 LWFVTCSAVVLPLELLDFPPVRR--AWDAHAVWHLSTAPLPL 148
           L F    AVVLP+ + ++   R+  AW   A W LS A LP+
Sbjct: 98  LSFTNSFAVVLPVFMQEYNETRQRVAWMGSAAWALSFAGLPV 139


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 196  RAADRREVQQLQRQHDRGARHEPQHARRVAG 288
            R+ DR E +   R HDR  + EP + RR  G
Sbjct: 1451 RSRDRHEQRSHPRAHDRADQREPWYMRRAEG 1481


>SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)
          Length = 839

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 543 EFMDYTCALSMVMGLYVAAVVRILHSQKKIVATLLTGSLLYFATHVRLLAT 391
           +F    C  ++ MGL V+ +  I     K+   LLTG L+Y    V  +A+
Sbjct: 648 QFFFALCTAALAMGLCVSMIAYIRLPSLKVSTLLLTGLLIYDVFWVAYVAS 698


>SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95)
          Length = 164

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 372 YNMTVNVIFGAVGSFIWLV 316
           +NMT NVI+G  G F W V
Sbjct: 73  FNMTENVIYGVFGRFAWAV 91


>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
          Length = 603

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 208 RREVQQLQRQHDRGARHEPQHARRVAGASRAQ 303
           +R  QQLQ+QH R ++H+ Q   + + AS+ Q
Sbjct: 233 QRLQQQLQKQHQRPSQHKTQTQNKQSRASKKQ 264


>SB_36032| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=1.9)
          Length = 108

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = -3

Query: 634 YGVTVAFICSCVHERVGMVYGVPHK------GYSVHRVHGLHVRPVHGHGAVRCCCCENI 473
           +GVTV  +  C    V   +GV         G +V R HG+ V   HG    RC  C  +
Sbjct: 27  HGVTVFTVSRCHGVTVSRCHGVTVSRCSRCHGVTVSRCHGVTVSRCHGVTVSRCSRCHGV 86


>SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 190 VPRAADRREVQQLQRQHDRGARHEPQHARRVAGASRAQVPRVHQPDKRTHR 342
           +P    RR  +  Q+ H R    + Q  RRV GA +    RV +  ++ HR
Sbjct: 1   LPHQLQRRVREAQQQLHRRVREAQQQLPRRVRGAQQQLQRRVREAQQQLHR 51


>SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)
          Length = 709

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 82  LQKFVLSALRITEIFNHELVEEQGQRRGAEVPH--GVRVPRAADRREVQQLQRQ 237
           L+   + +  + E  +HE+ E + Q  G + PH   V  PR +D  EV +L+ Q
Sbjct: 369 LESSYMQSQSLLEQQSHEIFELRHQIAGRQDPHQPSVPSPRTSDGSEVLELRNQ 422


>SB_22345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 525 CALSMVMGLYVAAVVRILHSQKKIVATLLTGSLLYFATHVRLLATGVVDYDYNMTVNVIF 346
           C +S +   +V     +L     +V  LLT +  +    V  +A GV D  Y +T+N++F
Sbjct: 136 CDVSFIKPRHVNQAAAVLSG---VVTILLTLASTFTFLAVLAVAYGVADGAYKVTINILF 192


>SB_14730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 121 IFNHELVEEQGQRRGAEVPHGVRVPRAADRREVQQLQRQHDRGARHEPQHAR 276
           I+N++L   +   R  ++  G+  PRA++ RE++ L    D  A   PQ ++
Sbjct: 2   IWNYQLCHGE---RDPDISKGMLFPRASESREIKSLDGIWDFRADDSPQRSK 50


>SB_40806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 477 ILHSQKKIVATLLTGSLLYFATHVRLLA-TGVVD 379
           +L ++KK+V   LT  LL+F T + LL   GV++
Sbjct: 230 VLKTRKKVVKMFLTVILLFFVTWIPLLLYVGVIE 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,093,106
Number of Sequences: 59808
Number of extensions: 436930
Number of successful extensions: 1203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)