Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f06r
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical ...    94   1e-19
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    31   1.1  
AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z46996-6|CAA87101.1|  237|Caenorhabditis elegans Hypothetical pr...    26   5.6  

>AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical
           protein R01B10.4 protein.
          Length = 320

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 66/211 (31%), Positives = 113/211 (53%), Gaps = 9/211 (4%)
 Frame = -1

Query: 735 MQEPASVFASLLNLXANAYMYSKLRTEFSIKSRPMVLLWHLFALVCMNAWVWSMVFHTRD 556
           +QEPAS+  SLLNL     +Y  LR    +++ P   +W ++A V M  W+ S +FH  D
Sbjct: 98  IQEPASMIFSLLNLFT---VYKMLRRFKKMQNLPNRTMWLVYAHVGMFTWISSSLFHMFD 154

Query: 555 TPFTEFMDYTCALSMVM-GLYVAAV----VRIL-HSQKKIVATLLTGSLLYFATHVRLLA 394
             FTE MDY  A S V+  LYV+ +    ++ L     K +  L   +L+Y    ++++ 
Sbjct: 155 CDFTEKMDYFGAYSFVLFALYVSVIFTKQLQFLGRGGPKYIQILF--ALVYLNHFMKMMQ 212

Query: 393 TGVVDYDYNMTVNVIFGAVGSFIWLVYAGYLSAR-GSRYSSR--MLWFVTCSAVVLPLEL 223
               DY YNMT  ++F  + + +++ +  Y     GS   S   ++  +  + +   LE+
Sbjct: 213 N--FDYGYNMTCCIVFSLITTCLYVHHLYYRKRNLGSLQESDIVLIRLIIWANLSTALEI 270

Query: 222 LDFPPVRRAWDAHAVWHLSTAPLPLLFYQFV 130
           LDF PV   +D+H+++HL+T P+P+ +  F+
Sbjct: 271 LDFTPVFWIFDSHSLFHLATIPIPIWWSDFL 301


>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
           protein Y116A8C.36 protein.
          Length = 1097

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 136 LVEEQGQRRGAEVPHGVRVPRAADRREVQQLQRQHDRGARHEPQHARRVAGASRAQVPRV 315
           ++EE+ QRR AEV    R   A   RE Q+ +RQ +   + E +  +R+  A R +  + 
Sbjct: 312 VLEEEEQRRRAEVEKKEREEEAKKNRERQEKERQAEVERQAELER-QRIIEAQREEEEKK 370

Query: 316 HQPDKRTHRAE 348
            + +    R E
Sbjct: 371 RRLEMERRREE 381


>AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical
           protein F54D7.2 protein.
          Length = 393

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -1

Query: 468 SQKKIVATLLTGSLLYFATHVRLLATGVVDYDYNMTVNVIFGAVGSFIWLVYAGY 304
           S  +++  L++  +++F TH     TG++   +   V+  FG V  ++W    GY
Sbjct: 162 SSVELLCVLISTQIVFFTTHWEKYNTGIMFLSWAYDVSQ-FGLVIVYLWTYIVGY 215


>Z46996-6|CAA87101.1|  237|Caenorhabditis elegans Hypothetical
           protein C34C12.8 protein.
          Length = 237

 Score = 26.2 bits (55), Expect(2) = 5.6
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 16  LRSGLSSVLFKNQQTKVTLLRF-LQKFVLSALRITEIFNHELVEEQGQRRGAE 171
           LR G+S V    QQT  T     +Q+F  +A + +E  N+E+ ++  + RGA+
Sbjct: 2   LRKGVSFVGQAVQQTLKTQKNLRIQRFSATASQSSEEVNYEIRKDGKRLRGAD 54



 Score = 20.6 bits (41), Expect(2) = 5.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 244 RGARHEPQHARRVAGASRAQVPR 312
           RGA +E      +AG  + Q+P+
Sbjct: 51  RGADYEEIVLTSIAGEDKTQIPK 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,096,132
Number of Sequences: 27780
Number of extensions: 303436
Number of successful extensions: 978
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)