Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f06f
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0003 - 7298555-7298841,7299199-7299386,7299484-7299683,729... 104 6e-23
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 99 3e-21
04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992... 31 0.96
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 30 1.7
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 29 2.9
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 29 2.9
01_01_1126 + 8925685-8925745,8926178-8926343,8927135-8927585,892... 29 2.9
11_04_0097 + 13448740-13450725 28 5.1
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 28 5.1
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 27 8.9
04_04_1034 + 30275708-30276022,30276354-30276440,30276833-302768... 27 8.9
>05_03_0003 -
7298555-7298841,7299199-7299386,7299484-7299683,
7299774-7300038,7302403-7302512
Length = 349
Score = 104 bits (249), Expect = 6e-23
Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 22/198 (11%)
Frame = +2
Query: 62 LVTVFILSCKLSQLSASEGDRLYIYKDCLKRC---------ISRNCDENG---LLFRQNT 205
L + ++ L + AS GD Y+ C++ C I +C G +
Sbjct: 12 LAALLVVGFVLGSVDASLGDVDPQYRTCVEECHTTGIIGENIISHCQSPGNDDASVGSSW 71
Query: 206 TIQQDFWCRLFSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASVF 385
Q+ + + C+++C+Y+CM + ++ G VK+HGKWPF R+ QEP S
Sbjct: 72 YTQEPLYMQWKQLNCMNDCRYYCMMQREGERQSRGLNPVKYHGKWPFIRVSVFQEPLSAA 131
Query: 386 ASLLNLLAN--AYMYSKLRTEFSIKSRPMVL--------LWHLFALVCMNAWVWSMVFHT 535
S +NLL + ++ L + + RP LWH++A++ MNAW WS +FHT
Sbjct: 132 LSAVNLLMHFTGWLSFFLLVNYKLPVRPQTKRTYYEYTGLWHIYAILSMNAWFWSSIFHT 191
Query: 536 RDTPFTEFMDYTCALSMV 589
RD TE +DY+ A++++
Sbjct: 192 RDIDLTEKLDYSSAVALL 209
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 98.7 bits (235), Expect = 3e-21
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 21/193 (10%)
Frame = +2
Query: 56 ITLVTVFILSCKLSQLSASEGDRLYIYKDCLKRCISR-NCDENGLLFRQNTT-------- 208
+ L+ + ++ L ASEGD +Y+ C+ C + E + Q T
Sbjct: 9 VALLVGLAAAAVVATLGASEGDADPLYRACVDECEKTGSLRETSVRHCQVPTDDHPADKS 68
Query: 209 --IQQDFWCRLFSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASV 382
+ + + W C EC+YHCM + E G VK+HGKWP KR QEP S
Sbjct: 69 WYAHEPLYLQWKEWNCKSECRYHCMMERESEREQLGLGSVKYHGKWPMKRASVFQEPISA 128
Query: 383 FASLLNLLA--NAYMYSKLRTEFSIKSRPMVL--------LWHLFALVCMNAWVWSMVFH 532
S L+LL N ++ L + + RP LWH++ L+ MNAW W ++H
Sbjct: 129 ALSALSLLVQFNGWLSFFLLLSYKLPLRPETQMTYYEYTGLWHIYGLLAMNAWFWRAIYH 188
Query: 533 TRDTPFTEFMDYT 571
+ DT +TE + Y+
Sbjct: 189 SCDTVWTEKLYYS 201
>04_03_0178 +
12298502-12298878,12298896-12298998,12299211-12299271,
12299423-12299486,12299825-12299996,12300765-12300863
Length = 291
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Frame = +3
Query: 519 LWCSTQGILRSQSS---------WTTRAPCPWSW 593
LWCST LRS ++ WT+R CPW W
Sbjct: 243 LWCSTPNKLRSHNTEFSLCVLQPWTSRG-CPWGW 275
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 101 LSASEGDRLYIYKDCLKRCISRNCDENGLLFRQNTTIQQDFWCRL 235
++AS G+ +++ C S CD G+ F +I DFW L
Sbjct: 1 MAASHGNAIFVLLLCTLFLPSLACDSGGVKFGYTGSIGPDFWGNL 45
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 489 ANKCHSNTIGLDLIENSVLNLEYMYAFANKLSRDANTDAGSCIPIIRLNGHLP 331
+ K S++ G L + L +E M + + K+ D A +CI ++ +GH P
Sbjct: 305 SKKSRSDSAGDALHRLADLRVESMESCSRKVEEDRARSAAACIQLVVADGHNP 357
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 489 ANKCHSNTIGLDLIENSVLNLEYMYAFANKLSRDANTDAGSCIPIIRLNGHLP 331
+ K S++ G L + L +E M + + K+ D A +CI ++ +GH P
Sbjct: 194 SKKSRSDSAGDALHRLADLRVELMESRSRKVEEDRARSAAACIQLVVADGHNP 246
>01_01_1126 +
8925685-8925745,8926178-8926343,8927135-8927585,
8927832-8927900,8928067-8928110,8928211-8928355
Length = 311
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 262 ALVYASPTEEPTPEILLYCCILSEQKAIFITIPRYASFETIFIYV 128
A+ + SPTEE + L Y + K++ + + AS++T+F V
Sbjct: 218 AVAFFSPTEEHADKALQYFVSVEPTKSLSLLLRWIASYQTLFTKV 262
>11_04_0097 + 13448740-13450725
Length = 661
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 283 RPHAMILALVYASPTEEPTP 224
RPH +L L A+PT PTP
Sbjct: 19 RPHLRLLCLATATPTPAPTP 38
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 185 LLFRQNTTIQQDFWCRLFSWRCIDECKYHCMWSAVK 292
L +++ TI D C L SWR +C C W V+
Sbjct: 14 LRLKRSFTITNDSQCTLASWRAGTDC---CRWEGVR 46
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 489 ANKCHSNTIGLDLIENSVLNLEYMYAFANKLSRDANTDAGSCIPIIRLNGHLP 331
+ K S++ G L + L ++ M + + K+ D A +CI ++ +GH P
Sbjct: 305 SKKSRSDSAGDALHRLADLRVQSMESRSRKVEEDRARSAAACIQLVVADGHNP 357
>04_04_1034 +
30275708-30276022,30276354-30276440,30276833-30276874,
30276983-30277027,30278826-30278891,30278956-30279012,
30279286-30279435,30279849-30279926,30280053-30280159,
30280261-30280291
Length = 325
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 346 QTDYGYARARIGICISTQFVSKRIHVFQIKDGVFNQIETYGVTVAFICSCVHERVGMVYG 525
Q+ G+ R + + F S+R V +I D + N+I T I S ++ V G
Sbjct: 147 QSPVGFIREKSNVIFRQLFRSRRPFVAEITDAMGNEIFTVRRPFWLINSSIYAEVNGKLG 206
Query: 526 VP 531
+P
Sbjct: 207 LP 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,002
Number of Sequences: 37544
Number of extensions: 379181
Number of successful extensions: 997
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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