Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f06f
         (615 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            26   0.84 
AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P...    25   1.9  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   7.8  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   7.8  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 26.2 bits (55), Expect = 0.84
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 525 TIDHTHAFMHTR-ANKCHSNTIGLDLIENSVLNL 427
           ++ H  A + TR + KC S+ + LDL +N++ NL
Sbjct: 192 SVFHFSASLSTRLSKKCGSSIVTLDLPQNTIDNL 225


>AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P450
           reductase protein.
          Length = 679

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 281 SAVKKLENAGRQVVKFHG 334
           S +KKL+++GR++V F+G
Sbjct: 71  SFIKKLQSSGRRLVVFYG 88


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 40  NGILKNNFSYSIYFKL*IE--SVIGERRRSLVH 132
           NG  K+NF Y+I F L  E   +  E+R++L+H
Sbjct: 34  NGSGKSNFFYAIQFVLSDEFTHLRPEQRQALLH 66


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 376  IGICISTQFVSKRIHVFQIKDGVFN 450
            IG  +   F + +  +  +KDG+FN
Sbjct: 1125 IGNMLKAHFTNSQFIIVSLKDGMFN 1149


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,651
Number of Sequences: 2352
Number of extensions: 15281
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)