Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f06f
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068718-5|AAC17768.1| 320|Caenorhabditis elegans Hypothetical ... 99 2e-21
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 30 1.5
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 30 1.5
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 29 3.5
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 29 3.5
AF250045-1|AAG17620.1| 246|Caenorhabditis elegans thioredoxin-l... 29 3.5
AF125955-2|AAD14719.1| 246|Caenorhabditis elegans Dumpy : short... 29 3.5
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 29 3.5
Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical pr... 28 6.1
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 8.1
AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical ... 27 8.1
AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical... 27 8.1
AL034393-24|CAA22312.3| 833|Caenorhabditis elegans Hypothetical... 27 8.1
AL032648-7|CAD57711.1| 93|Caenorhabditis elegans Hypothetical ... 27 8.1
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 8.1
>AF068718-5|AAC17768.1| 320|Caenorhabditis elegans Hypothetical
protein R01B10.4 protein.
Length = 320
Score = 99.1 bits (236), Expect = 2e-21
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 8/192 (4%)
Frame = +2
Query: 62 LVTVFILSCKLSQLSASEGDRLYIYKDCLKRCISR-NCDENGLLFRQNTTIQQD-FWCRL 235
+V +++C + QL AS GDR Y++C + CIS+ NC F + D FWCR
Sbjct: 6 VVGCLLITCFV-QLEASPGDRSIWYQECTQVCISKYNCSTK---FGTLDWARGDCFWCR- 60
Query: 236 FSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRI---MG--MQEPASVFASLLN 400
Y CMW + ++ V +FHGKWPF I G +QEPAS+ SLLN
Sbjct: 61 ----------YDCMWDTIGHFDSNFGVVPQFHGKWPFLAIPLPFGFIIQEPASMIFSLLN 110
Query: 401 LLANAYMYSKLRTEFSIKSRPMVLLWHLFALVCMNAWVWSMVFHTRDTPFTEFMDYTCAL 580
L +Y LR +++ P +W ++A V M W+ S +FH D FTE MDY A
Sbjct: 111 LFT---VYKMLRRFKKMQNLPNRTMWLVYAHVGMFTWISSSLFHMFDCDFTEKMDYFGAY 167
Query: 581 SMVM-GLYVAAV 613
S V+ LYV+ +
Sbjct: 168 SFVLFALYVSVI 179
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 314 ADQHSLISLQQTTCNDTCTRLCIAN*RAYTRNPV 213
+D+HS+ SL +TT N T +R I + ++ RN V
Sbjct: 504 SDRHSIGSLDETTSNRTLSRTGIESAASFARNSV 537
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 314 ADQHSLISLQQTTCNDTCTRLCIAN*RAYTRNPV 213
+D+HS+ SL +TT N T +R I + ++ RN V
Sbjct: 504 SDRHSIGSLDETTSNRTLSRTGIESAASFARNSV 537
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -1
Query: 543 VSLVWNTIDHTHAFMHTRANKCHSNTIGLDLIENSVLNLEYMYAFANKLSRDANTDAGSC 364
+ L+ +++H + T+A KC T + +E L E +Y N ++ D+G
Sbjct: 104 MGLIPRSVEHVFQHLDTKAKKCQKLTFSVS-VEFVELYNEVIYDLLNAKNKVQLRDSGKD 162
Query: 363 IPIIRLNGHLP*NL 322
I ++ G LP N+
Sbjct: 163 IQLV---GALPKNV 173
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -1
Query: 543 VSLVWNTIDHTHAFMHTRANKCHSNTIGLDLIENSVLNLEYMYAFANKLSRDANTDAGSC 364
+ L+ +++H + T+A KC T + +E L E +Y N ++ D+G
Sbjct: 104 MGLIPRSVEHVFQHLDTKAKKCQKLTFSVS-VEFVELYNEVIYDLLNAKNKVQLRDSGKD 162
Query: 363 IPIIRLNGHLP*NL 322
I ++ G LP N+
Sbjct: 163 IQLV---GALPKNV 173
>AF250045-1|AAG17620.1| 246|Caenorhabditis elegans thioredoxin-like
protein DPY-11 protein.
Length = 246
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 CKEIRECWSASSQVSWQVAIQTDYGYARARIGICISTQFVSKRIH-VFQIKDGVFNQ 453
CK++++ W+A + S + I+ G + +S +F+ + ++ +KDGVF Q
Sbjct: 54 CKDLQKAWNAFADWSDDLGIKV--GEVDVTVNPGLSGRFLVTALPTIYHVKDGVFRQ 108
>AF125955-2|AAD14719.1| 246|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 11 protein.
Length = 246
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 CKEIRECWSASSQVSWQVAIQTDYGYARARIGICISTQFVSKRIH-VFQIKDGVFNQ 453
CK++++ W+A + S + I+ G + +S +F+ + ++ +KDGVF Q
Sbjct: 54 CKDLQKAWNAFADWSDDLGIKV--GEVDVTVNPGLSGRFLVTALPTIYHVKDGVFRQ 108
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -1
Query: 543 VSLVWNTIDHTHAFMHTRANKCHSNTIGLDLIENSVLNLEYMYAFANKLSRDANTDAGSC 364
+ L+ +++H + T+A KC T + +E L E +Y N ++ D+G
Sbjct: 104 MGLIPRSVEHVFQHLDTKAKKCQKLTFSVS-VEFVELYNEVIYDLLNAKNKVQLRDSGKD 162
Query: 363 IPIIRLNGHLP*NL 322
I ++ G LP N+
Sbjct: 163 IQLV---GALPKNV 173
>Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical
protein F07B10.4 protein.
Length = 724
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Frame = +1
Query: 307 WSASSQVSWQVAIQTDYGYARARIGICISTQFVSKRIHVFQ-IKDGVFNQIETYG--VTV 477
W A SW+ + CI I V Q +D + + Y VTV
Sbjct: 578 WYALKSTSWEFIVMMIASMTATVFFACIFVVCSLATIIVVQSARDTMSYKTVKYHIQVTV 637
Query: 478 AFICSCVHERVGMVYGVPH 534
F+CSCV + + +V V H
Sbjct: 638 LFLCSCVIQALFVVLPVTH 656
>Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical
protein F54B11.6 protein.
Length = 183
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 194 RQNTTIQQDFWCRLFSWRCIDECKYHCMWS 283
R+ ++ WC W+C E YHC W+
Sbjct: 114 RELAVAKKKQWC----WQCNSEAIYHCCWN 139
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = -1
Query: 264 LHSSMHRQLKSLHQKSCCIVVFCLNKRPFSSQFLDMHRLRQSL---YMYKRSPSLADN*L 94
LHS RQL S+H + P S L +H ++ L Y +S S N
Sbjct: 1938 LHSEFDRQLHSMHSSNSSWFCRQCGHSPKSEIDLFLHYIQVHLKPAYDKHQSNSFKSNVF 1997
Query: 93 NLQLKINTVTKVIFKDP 43
+L+ I + T F+ P
Sbjct: 1998 HLKCPIRSCTSPEFQSP 2014
>AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical
protein F58D5.6 protein.
Length = 787
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 278 WSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASVFASLLN 400
WS +K +E+ HGK+PF+ + G+ + + L N
Sbjct: 250 WSELKFVESNPTSGAFKHGKYPFRFLSGVLKSRETWTKLAN 290
>AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical
protein Y18D10A.7c protein.
Length = 936
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 277 HAMILALVYASPTEEPTPEILL-YCCILSEQKAIFITIP 164
++MI++ + A+P E+P I+ YC +++ FI IP
Sbjct: 15 NSMIISKIRAAPLEQPWANIVAKYCLFVAKYPWPFIIIP 53
>AL034393-24|CAA22312.3| 833|Caenorhabditis elegans Hypothetical
protein Y18D10A.7a protein.
Length = 833
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 277 HAMILALVYASPTEEPTPEILL-YCCILSEQKAIFITIP 164
++MI++ + A+P E+P I+ YC +++ FI IP
Sbjct: 15 NSMIISKIRAAPLEQPWANIVAKYCLFVAKYPWPFIIIP 53
>AL032648-7|CAD57711.1| 93|Caenorhabditis elegans Hypothetical
protein Y54G9A.9 protein.
Length = 93
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 505 RVGMVYGVPHKGYSVHRVHGLHVRPVHG 588
++G +GVP Y R HG H++P G
Sbjct: 35 QIGAGFGVPFGFYVAWRQHGRHLKPFLG 62
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = -1
Query: 264 LHSSMHRQLKSLHQKSCCIVVFCLNKRPFSSQFLDMHRLRQSL---YMYKRSPSLADN*L 94
LHS RQL S+H + P S L +H ++ L Y +S S N
Sbjct: 1938 LHSEFDRQLHSMHSSNSSWFCRQCGHSPKSEIDLFLHYIQVHLKPAYDKHQSNSFKSNVF 1997
Query: 93 NLQLKINTVTKVIFKDP 43
+L+ I + T F+ P
Sbjct: 1998 HLKCPIRSCTSPEFQSP 2014
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,125,995
Number of Sequences: 27780
Number of extensions: 345281
Number of successful extensions: 933
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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