Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f06f
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 119 2e-27
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 119 2e-27
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 119 2e-27
At5g62130.1 68418.m07798 Per1-like protein-related 99 1e-21
At5g52390.1 68418.m06500 photoassimilate-responsive protein, put... 31 0.61
At3g44770.1 68416.m04820 hypothetical protein contains Pfam prof... 29 1.9
At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal... 29 3.2
At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal... 29 3.2
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 29 3.2
At5g48310.1 68418.m05968 expressed protein 28 5.7
At3g24840.1 68416.m03116 SEC14 cytosolic factor, putative / phos... 28 5.7
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 28 5.7
At2g31940.1 68415.m03901 expressed protein 27 7.5
At5g09460.1 68418.m01095 expressed protein 27 9.9
At3g55080.1 68416.m06117 SET domain-containing protein low simil... 27 9.9
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 119 bits (286), Expect = 2e-27
Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 17/188 (9%)
Frame = +2
Query: 77 ILSCKLSQLSASEGDRLYIYKDCLKRCISRNCDENGLLFRQ-NTT-------IQQDFWCR 232
+L C +AS GD Y+ C+ C C L F Q N++ IQ+ + +
Sbjct: 12 LLPCLFCISNASAGDADPDYRTCVSECEISGC-VGQLCFPQCNSSSDGGPWYIQEPLYLQ 70
Query: 233 LFSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASVFASLLNLLAN 412
W C +C+Y CM + + E G+ VK+HGKWPFKR++G+QEPASV S+LNL +
Sbjct: 71 WKKWGCQGDCRYQCMVNRETERETLGQAPVKYHGKWPFKRVLGIQEPASVAFSVLNLAMH 130
Query: 413 AY--------MYSKLRTEFSIKS-RPMVLLWHLFALVCMNAWVWSMVFHTRDTPFTEFMD 565
+ +Y KL + + V LWH++ L+ MN+W WS VFH+RD TE +D
Sbjct: 131 FHGWLSFFIMIYYKLPLKQDRTAYYEYVGLWHIYGLLSMNSWFWSAVFHSRDVDLTERLD 190
Query: 566 YTCALSMV 589
Y+ A++++
Sbjct: 191 YSSAVAIL 198
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 119 bits (286), Expect = 2e-27
Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 17/188 (9%)
Frame = +2
Query: 77 ILSCKLSQLSASEGDRLYIYKDCLKRCISRNCDENGLLFRQ-NTT-------IQQDFWCR 232
+L C +AS GD Y+ C+ C C L F Q N++ IQ+ + +
Sbjct: 12 LLPCLFCISNASAGDADPDYRTCVSECEISGC-VGQLCFPQCNSSSDGGPWYIQEPLYLQ 70
Query: 233 LFSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASVFASLLNLLAN 412
W C +C+Y CM + + E G+ VK+HGKWPFKR++G+QEPASV S+LNL +
Sbjct: 71 WKKWGCQGDCRYQCMVNRETERETLGQAPVKYHGKWPFKRVLGIQEPASVAFSVLNLAMH 130
Query: 413 AY--------MYSKLRTEFSIKS-RPMVLLWHLFALVCMNAWVWSMVFHTRDTPFTEFMD 565
+ +Y KL + + V LWH++ L+ MN+W WS VFH+RD TE +D
Sbjct: 131 FHGWLSFFIMIYYKLPLKQDRTAYYEYVGLWHIYGLLSMNSWFWSAVFHSRDVDLTERLD 190
Query: 566 YTCALSMV 589
Y+ A++++
Sbjct: 191 YSSAVAIL 198
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 119 bits (286), Expect = 2e-27
Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 17/188 (9%)
Frame = +2
Query: 77 ILSCKLSQLSASEGDRLYIYKDCLKRCISRNCDENGLLFRQ-NTT-------IQQDFWCR 232
+L C +AS GD Y+ C+ C C L F Q N++ IQ+ + +
Sbjct: 12 LLPCLFCISNASAGDADPDYRTCVSECEISGC-VGQLCFPQCNSSSDGGPWYIQEPLYLQ 70
Query: 233 LFSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASVFASLLNLLAN 412
W C +C+Y CM + + E G+ VK+HGKWPFKR++G+QEPASV S+LNL +
Sbjct: 71 WKKWGCQGDCRYQCMVNRETERETLGQAPVKYHGKWPFKRVLGIQEPASVAFSVLNLAMH 130
Query: 413 AY--------MYSKLRTEFSIKS-RPMVLLWHLFALVCMNAWVWSMVFHTRDTPFTEFMD 565
+ +Y KL + + V LWH++ L+ MN+W WS VFH+RD TE +D
Sbjct: 131 FHGWLSFFIMIYYKLPLKQDRTAYYEYVGLWHIYGLLSMNSWFWSAVFHSRDVDLTERLD 190
Query: 566 YTCALSMV 589
Y+ A++++
Sbjct: 191 YSSAVAIL 198
>At5g62130.1 68418.m07798 Per1-like protein-related
Length = 343
Score = 99 bits (238), Expect = 1e-21
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 20/192 (10%)
Frame = +2
Query: 62 LVTVFILSCKLSQLSASEGDRLYIYKDCLKRCISRNC-----------DENGLLFRQNTT 208
++ + ++SC +S L ASEGD +YK C+ +C C +G
Sbjct: 8 VLLIIVVSCLVSTLEASEGDSDSLYKSCVDQCQKTGCVGDTCFQHCKFSADGKAIDGPWY 67
Query: 209 IQQDFWCRLFSWRCIDECKYHCMWSAVKKLENAGRQVVKFHGKWPFKRIMGMQEPASVFA 388
+Q+ + R W C +C+Y CM + ++ + G + K+ GKWP K + G+QEP SV
Sbjct: 68 MQEPLYLRWKQWDCQSDCQYECMMTREEERKRNGERPTKYFGKWPLKHVYGIQEPVSVAF 127
Query: 389 SLLNLLAN-----AY---MYSKLRTEFSIKS-RPMVLLWHLFALVCMNAWVWSMVFHTRD 541
S L+L +Y +Y KL + + K+ + H++A++ MN+ WS + H+RD
Sbjct: 128 SALDLAMQFQGWVSYFILVYYKLPLQPNRKTYYEYNGIVHIYAIIVMNSLFWSSICHSRD 187
Query: 542 TPFTEFMDYTCA 577
TE +DY+ A
Sbjct: 188 VELTERLDYSSA 199
>At5g52390.1 68418.m06500 photoassimilate-responsive protein,
putative similar to PIR|S62698
photoassimilate-responsive protein precursor (clone
PAR-1a) - common tobacco
Length = 195
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = +2
Query: 77 ILSCKLSQLSASEGDRLYIYKDCLKRCISRNCDENGLLFRQNTTIQQDFWCRLFSWRCID 256
+ +C+ S++ A++ + +C+K C D L + ++ F +L S +C++
Sbjct: 60 VYTCRSSEIEANKVTNIIESDECIKAC---GLDRKALGISSDALLESQFTHKLCSVKCLN 116
Query: 257 EC 262
+C
Sbjct: 117 QC 118
>At3g44770.1 68416.m04820 hypothetical protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 505
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 477 GIYLLLCA*TRGYGLWCSTQGILRSQSSWTTRAPC 581
GI+L++C+ R + L C+ QG LR + TTR C
Sbjct: 36 GIFLMVCSPPRLFLLNCNVQGFLRGIQA-TTRENC 69
>At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal
domain-containing protein similar to beta-glucuronidase
precursor [Scutellaria baicalensis] GI:8918740; contains
Pfam profile PF03662: Glycosyl hydrolase family 79,
N-terminal domain
Length = 382
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 125 LYIYKDCLKRCISRNCDENGLLFRQNT----TIQQDFWCRLFSWRCIDECKY-HCMW 280
++ + DC +S +ENG +F TI +DF C W ++C Y C W
Sbjct: 15 VFQFLDCT---VSSAVEENGTVFVYGRAAVGTIDEDFICATLDWWPPEKCDYGSCSW 68
>At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal
domain-containing protein similar to beta-glucuronidase
precursor [Scutellaria baicalensis] GI:8918740; contains
Pfam profile PF03662: Glycosyl hydrolase family 79,
N-terminal domain
Length = 536
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 125 LYIYKDCLKRCISRNCDENGLLFRQNT----TIQQDFWCRLFSWRCIDECKY-HCMW 280
++ + DC +S +ENG +F TI +DF C W ++C Y C W
Sbjct: 15 VFQFLDCT---VSSAVEENGTVFVYGRAAVGTIDEDFICATLDWWPPEKCDYGSCSW 68
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 20 SKELILIMGSLKITLVTVFILSCKLSQLSASEGDRLYIYKDCLKRC 157
+K I M S+K + + IL KL + S + YK+CL++C
Sbjct: 123 TKAAIAEMESVKTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQC 168
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 280 VCCKEIRECWSASSQVSWQVAIQTD 354
+C E+ EC S S Q +WQ + D
Sbjct: 263 ICSDELEECHSISGQYAWQSLLAYD 287
>At3g24840.1 68416.m03116 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; similar to SEC14
CYTOSOLIC FACTOR (PHOSPHATIDYLINOSITOL/
PHOSPHATIDYLCHOLINE TRANSFER PROTEIN) GB:P46250 from
[Candida albicans] (Yeast (1996) 12(11), 1097-1105);
contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam
PF03765 : CRAL/TRIO, N-terminus
Length = 579
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = -1
Query: 594 PMTMDRAHV*SMNSVNGVSLVWNTI-----DHTHAFMHTRANKCHSNTIGLDLIENSVL 433
P T+++ ++ +N+ NG LVWNT+ T + +H NK S+ L++I+ S L
Sbjct: 253 PETLNQMYI--INAGNGFKLVWNTVKGFLDPKTTSKIHVLGNKYRSHL--LEIIDPSEL 307
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 165 LDMHRLRQSLYMYKRSPSLAD 103
L +HRLRQ Y Y ++P +AD
Sbjct: 241 LYLHRLRQKRYPYPKNPIMAD 261
>At2g31940.1 68415.m03901 expressed protein
Length = 120
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 238 EEPTPEILLYCCILSEQKAIFITIPRYASFETI 140
+E +P + L+ C+ +F+TI YAS+E +
Sbjct: 5 QEGSPPVPLHLCVFVLILLMFVTISWYASYEPV 37
>At5g09460.1 68418.m01095 expressed protein
Length = 326
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -1
Query: 309 PAFSNFFTADHMQ*YLHSSMHRQLKSLHQKSCCIVVFCLNKR 184
P + A+H YL L Q+SC V CLN R
Sbjct: 36 PELGKVYAAEHQFRYLQPPFQALLSRYDQQSCGKQVSCLNGR 77
>At3g55080.1 68416.m06117 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 463
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 241 LAMHRRVQVSLHVVCCKEIRECWSASSQVSWQVAIQTDYGYARARI 378
L H + H VC KE+ EC+ S + + + + D Y R+
Sbjct: 398 LLSHINRLIEDHSVCIKEMEECYFVSQRFAVRRQMARDLLYGELRV 443
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,084,232
Number of Sequences: 28952
Number of extensions: 310781
Number of successful extensions: 848
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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