Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f05f
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   268   2e-72
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414...    29   1.9  
11_06_0592 - 25327128-25329566                                         28   5.9  
08_01_0346 - 3063440-3064189                                           28   5.9  
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    28   5.9  
08_02_0478 + 17621678-17623768                                         27   7.7  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  268 bits (657), Expect = 2e-72
 Identities = 131/148 (88%), Positives = 138/148 (93%)
 Frame = +1

Query: 28  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 207
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7   ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66

Query: 208 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 387
           RIRELTSVVQKRFN PE  VELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67  RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126

Query: 388 FIMESGARGCEVVVSGKLRGQRAKSMKF 471
           F+MESGA+GCEV+VSGKLR QRAKSMKF
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKF 154



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = +2

Query: 470 FVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 562
           F DG MI SG P N Y+++A RHVLLRQGVL
Sbjct: 154 FKDGYMISSGYPVNLYIDSAVRHVLLRQGVL 184


>05_04_0322 +
           20239793-20240127,20240176-20240728,20241317-20241425,
           20244456-20244723,20244943-20245197,20245594-20246539
          Length = 821

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 285 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 380
           G  SWS RY+    ISK   Y   RC  C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697


>11_06_0592 - 25327128-25329566
          Length = 812

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 553 LPEKHMSGSSVDVVIARVSRVDHESIYKTSLIWHVDHA 440
           LPE H S  S  +++AR S+V+ +       I HV HA
Sbjct: 139 LPELHNSEESSSLLVARDSKVEEKRDEFLRAIDHVHHA 176


>08_01_0346 - 3063440-3064189
          Length = 249

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 319 AESLRYKLIGGLAVRRACYGVLR 387
           A S    L+GG A   ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = -1

Query: 475 YKTSLIWHVDHAACQIQQLHNHGRQIP**NGEHHSKH 365
           Y T L  H   AA    Q H HG       G HHSKH
Sbjct: 245 YGTPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280


>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 473 VDGLMIHSGDPCNDYVNTATRHVLLRQGVL 562
           + GL+IHSG   ND+V+++   +  + G++
Sbjct: 423 IHGLVIHSGFASNDFVSSSLIFMYSKSGII 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,204,398
Number of Sequences: 37544
Number of extensions: 336523
Number of successful extensions: 896
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)