Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f05f
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       280   5e-76
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   2.6  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)             27   7.9  
SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)                    27   7.9  
SB_15903| Best HMM Match : Gate (HMM E-Value=6)                        27   7.9  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  280 bits (687), Expect = 5e-76
 Identities = 138/148 (93%), Positives = 143/148 (96%)
 Frame = +1

Query: 28  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 207
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 208 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 387
           RIRELTSVVQKRF  PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65  RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124

Query: 388 FIMESGARGCEVVVSGKLRGQRAKSMKF 471
           FIMESGA+GCEVVVSGKLRGQRAKSMKF
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKF 152



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +2

Query: 470 FVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 562
           FVDGLM+H+G+P   YV+TA RHV LRQGVL
Sbjct: 152 FVDGLMVHAGEPTTHYVDTAVRHVYLRQGVL 182


>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +1

Query: 82  EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 243
           E+L R++  D YS  E    +TP         +IMA R QSVL ++GR   +LT   Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230

Query: 244 FNIPEQSVELYA 279
           F+    SVE +A
Sbjct: 231 FDDLADSVEQFA 242


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +1

Query: 112  GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 291
            GY+  +     + S +++ A   +++  ++ + +RE    +QKRF   E+   +Y     
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000

Query: 292  TRGLCAIAQA 321
             RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 291 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWRPW 413
           Y+W L + P  +  ++ Y R    +  L C+P  +  W  W
Sbjct: 4   YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44


>SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
          Length = 611

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 288 GYSWSLRYRPGRISKIQAYRRSRCTSCLLWCSP 386
           GY+++LRY+P  ++     R++R  + +LW +P
Sbjct: 363 GYNYTLRYKPNTVTN----RKTRKRNNILWYNP 391


>SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 226 SVVQKRFNIPEQSVELYAEKVATRGLCAI 312
           +++ + F  P    E +A K+ TRGLC I
Sbjct: 402 NILHRHFGYPVTFQEFFAIKLITRGLCRI 430


>SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)
          Length = 120

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +1

Query: 73  ELNEFLTRELAE-DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 249
           E+ E + + +AE +G SG EV+   ++ +  ++  +TQ    E  ++ +EL  + +KR N
Sbjct: 20  EVIEVVNKLIAEGEGESGNEVKENKVKKKPSVIK-QTQ----EDEKKTKELEELKEKRIN 74

Query: 250 IPE 258
           +P+
Sbjct: 75  LPQ 77


>SB_15903| Best HMM Match : Gate (HMM E-Value=6)
          Length = 444

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 288 GYSWSLRYRPGRISKIQAYRRSRCTSCLLW 377
           G +W +R  P  + + +A+R +R  SC LW
Sbjct: 88  GKNWKVRASPAWVRRYRAFRHAR--SCSLW 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,431,646
Number of Sequences: 59808
Number of extensions: 375330
Number of successful extensions: 1118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)