Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f05f
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   250   7e-67
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC084197-36|AAG23464.2|  381|Caenorhabditis elegans Hypothetical...    27   7.0  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  250 bits (611), Expect = 7e-67
 Identities = 122/154 (79%), Positives = 138/154 (89%), Gaps = 1/154 (0%)
 Frame = +1

Query: 13  MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 189
           MA N N++KK+K V  G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1   MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60

Query: 190 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 369
           LGE+GRRI+ELTSVVQKRF   E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61  LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120

Query: 370 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 471
           CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKF
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKF 154



 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +2

Query: 470 FVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 562
           FVDGLMIHSG P NDY+  A RHV LRQGV+
Sbjct: 154 FVDGLMIHSGHPVNDYIQQAVRHVQLRQGVI 184


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 4   VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 117
           +A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 4   VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 117
           +A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 178 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 297
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 100 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 261
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 100 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 261
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720


>AC084197-36|AAG23464.2|  381|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.24 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 1/126 (0%)
 Frame = -2

Query: 498 PEWIMSPSTKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSDKLVS*RFG 319
           P WI +P  K + F  L  ++  +          +    N +A        DK+     G
Sbjct: 217 PSWIKAPKLKGYTFEKLKAKILEFAEVHQNACAEYGPCGNLMAGYWLQNLIDKVADANAG 276

Query: 318 LGDSAKTTSSHLFSIQFYRLLWNVESLL-YYGSQLTDSASFLSEHTLCPGGHNNDLRADG 142
            G      +SH        +  +V  L+ Y   +LT SA F+ E    P      L  D 
Sbjct: 277 KGPQVIGYASHT------EITLSVMKLMGYVKDELTTSAGFVVEFKRLPKPAVRLLNHDP 330

Query: 141 SDPDFH 124
           +  D H
Sbjct: 331 NPIDDH 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,261,218
Number of Sequences: 27780
Number of extensions: 270938
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)