Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11f05f
(562 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 265 2e-71
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 261 3e-70
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 261 3e-70
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 32 0.30
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 32 0.30
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 31 0.53
At2g25150.1 68415.m03008 transferase family protein similar to 1... 31 0.53
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel... 30 0.92
At1g56240.1 68414.m06465 SKP1 interacting partner 3-related cont... 29 2.8
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 28 3.7
At5g54230.1 68418.m06755 myb family transcription factor (MYB49)... 27 6.5
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 27 6.5
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 27 6.5
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 265 bits (649), Expect = 2e-71
Identities = 129/148 (87%), Positives = 138/148 (93%)
Frame = +1
Query: 28 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 207
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 208 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 387
RIRELTS+VQKRF P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 388 FIMESGARGCEVVVSGKLRGQRAKSMKF 471
F+MESGA+GCEV+VSGKLR RAKSMKF
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKF 152
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +2
Query: 470 FVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 562
F DG M+ SG P +Y++ A RHVLLRQGVL
Sbjct: 152 FKDGYMVSSGQPTKEYIDAAVRHVLLRQGVL 182
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 261 bits (639), Expect = 3e-70
Identities = 128/148 (86%), Positives = 136/148 (91%)
Frame = +1
Query: 28 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 207
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 208 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 387
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 388 FIMESGARGCEVVVSGKLRGQRAKSMKF 471
F+MESGA+GCEV+VSGKLR RAKSMKF
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKF 152
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +2
Query: 470 FVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 562
F DG M+ SG P +Y+++A RHVLLRQGVL
Sbjct: 152 FKDGYMVSSGQPTKEYIDSAVRHVLLRQGVL 182
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 261 bits (639), Expect = 3e-70
Identities = 128/148 (86%), Positives = 136/148 (91%)
Frame = +1
Query: 28 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 207
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 208 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 387
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 388 FIMESGARGCEVVVSGKLRGQRAKSMKF 471
F+MESGA+GCEV+VSGKLR RAKSMKF
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKF 152
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +2
Query: 470 FVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 562
F DG M+ SG P +Y++ A RHVLLRQGVL
Sbjct: 152 FKDGYMVSSGQPTKEYIDAAVRHVLLRQGVL 182
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 31.9 bits (69), Expect = 0.30
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 225 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 136
S+L + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 31.9 bits (69), Expect = 0.30
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 225 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 136
S+L + + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -2
Query: 324 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL 181
FG + TSS F FY L W + +L YG L +AS LS T+
Sbjct: 309 FGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSL--AASTLSSETI 354
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 156 LRADGSDPDFHAGVAVLGQLPSEELIEFRLENSISNK 46
L+ SDP GV V+ +LP + ++EF+ E + K
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEFKREMATMKK 454
>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
putative (CNGC17) similar to cyclic nucleotide and
calmodulin-regulated ion channel cngc5 GI:4581205 from
[Arabidopsis thaliana]
Length = 720
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 324 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHT 184
FG + SS F FY L W ++ L YG L+ + F+ E T
Sbjct: 333 FGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLS-TTMFMGETT 378
>At1g56240.1 68414.m06465 SKP1 interacting partner 3-related
contains similarity to SKP1 interacting partner 3
GI:10716951 from [Arabidopsis thaliana]
Length = 284
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 1 AVAIMAVNNISKKR--KFVGDGVFKAELNEFLTRELAED--GYSGVEVRVTPIRSEIII 165
A+ + AV K+R K DG + EL EF+TRE +D S EV+ ++ I+I
Sbjct: 215 AMTVEAVGGDGKRREPKARDDGWLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVI 273
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -2
Query: 384 ENTIASTTYSETSDKLVS*RFGLGDSAKTT---SSHLFSIQFYRLLWNVESLLYYGSQLT 214
+N ++ + + + +FG+ A TT ++ S Y L W + +L YG +T
Sbjct: 278 QNVTQVLSHCDATSSTTNFKFGMFAEAFTTQVATTDFVSKYLYCLWWGLRNLSSYGQNIT 337
Query: 213 DSASFLSEHTLC 178
S +L E C
Sbjct: 338 TSV-YLGETLFC 348
>At5g54230.1 68418.m06755 myb family transcription factor (MYB49)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 319
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 309 SAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL-CPGGHNNDLRADGSD 136
SA S H+ + ++ WN S + G+ + S S T GG +D + GSD
Sbjct: 243 SAAFVSDHINDGENFKAGWNFSSSMLAGTSSSSSTPLNSSSTFYVNGGSEDDRESFGSD 301
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 225 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 136
++L + LSEH++ GH ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 34 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 210
K RK G + KA + E+ ++ GYSG P+ + ++ +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,724,984
Number of Sequences: 28952
Number of extensions: 259653
Number of successful extensions: 699
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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