Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11f04r
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    31   0.17 
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    30   0.30 
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    29   0.92 
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    28   1.6  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    27   2.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   2.8  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   4.9  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.9  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   4.9  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    26   6.5  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   6.5  

>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 457 YPVSSK*NSNLSFRGYILSSMPLPKYEGHNNPPRSQV-NKDNLDVLAG 597
           +P+  K N+N  F+GY+ + + L  + G+    RS + + D LD+  G
Sbjct: 503 FPIGGKPNANDFFQGYLAAPVTLAFFIGYKIYDRSHIPSLDKLDITTG 550


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 457 YPVSSK*NSNLSFRGYILSSMPLPKYEGHNNPPRSQV-NKDNLDVLAGKFVWKPSTSEGK 633
           +P+ SK N+N  F+GY+ + + +  + G+    RS + +   LD+  G   + P   E +
Sbjct: 507 FPIGSKPNANDFFQGYLAAPIVIAFFIGYKIYDRSHIPSLSKLDLDTGLRTYPPKDKESE 566


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 457 YPVSSK*NSNLSFRGYILSSMPLPKYEGHNNPPRSQV-NKDNLDVLAG 597
           +P+    N+N  F+GY+ + + L  + G+    RS + + D LD+  G
Sbjct: 503 FPIGGSPNANDFFQGYLAACITLVFFIGYKIYDRSHIPSLDKLDITTG 550


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 596 GNSCGSQVLLRGRSWRYGIRSCARNRRL 679
           G  CG  ++  G S   G+R C R+ R+
Sbjct: 77  GRICGVSIMRAGESMEQGLRECCRSVRI 104


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 263 SGSITTSLRIYKETFAGSRLNNLAQVPTSVPTWALRLKYELFQHPDYMLRWKYTNLLGS 87
           +G    SL +  ++F    LN++  V   V  WA RL +     P Y   W+   +LG+
Sbjct: 27  TGYAIDSLALIADSF--HMLNDI--VSLLVALWATRLAHSTSHEPKYTYGWQRAEILGA 81


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 143 ARISNEAPMLELKLGPEPDYSTSNLR 220
           AR+ +EAP+ E KLGP+ +   S  R
Sbjct: 91  ARLPHEAPIKEAKLGPDTNIRPSEPR 116


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 68  GHFAAFERPKDFSDDV 21
           GH+  FE+PK+FS+ +
Sbjct: 249 GHWVHFEKPKEFSESI 264


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 703 SATPNTTFKAAISGT*SDPISPRSSPQKYLASTRISQLT 587
           SATP+TT  ++ S + S   S +SS     +S+R S  T
Sbjct: 138 SATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRT 176


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -2

Query: 317 DKYYDFDKLLDNIM-LYWASGSITTSL-RIYKETFAGSRLNNLAQVPTSVPTWALRLKYE 144
           D+YY + + +DN++ L      + T+L R+Y        L  L     ++  W LR++  
Sbjct: 619 DRYYMYKQDIDNVVGLKDFKVYLKTTLNRLYNSKLTRKVLYYLFSPLFTLELWKLRVRGA 678

Query: 143 LFQHPDYMLRWKYTN 99
           L + P   LR  Y++
Sbjct: 679 LSKFPTNCLRSVYSH 693


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 505 ILSSMPLPKYEGHNNPPRSQVNKDNLD-VLAGKFVWKPSTSEGKIVAIW 648
           IL    LP    H  P  SQ+ KD LD +  G+ +W     E KI+  W
Sbjct: 2   ILEDTDLPL--SHEQPSYSQI-KDVLDKIPTGEHLWDLPKYEEKIILNW 47


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 692 QYYIQGGDFGHMIGSHIATIFPSEVLGFHTNFPA 591
           + YI+      MIG H+  ++   V+ F TN+ A
Sbjct: 400 EIYIRSITHAIMIGDHVMVMYKGPVITFITNYGA 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,729
Number of Sequences: 5004
Number of extensions: 74874
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)